当前解析结果
SmilChr08G002902| 统一新 Gene ID | SmilChr08G002902 |
|---|---|
| 名称 | SmilChr08G002902 |
| 描述 | uncharacterized SmilChr08G002902 |
| 染色体 / SeqID | Chr08 / NC_080394.1 |
| 坐标与链方向 | 28987849 - 28990231 / - |
| NCBI Gene ID | LOC130998290 |
|---|---|
| GeneID | 130998290 |
| locus_tag | - |
| NCBI Name | LOC130998290 |
| 原始查询 | SmilChr08G002902 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | hit=Os06g0704400; species=rice; confidence=low |
| 产物 | hit=Os06g0704400; species=rice; confidence=low |
| Arabidopsis | AT1G06740 (MUG3)MuDR family transposase [Source:NCBI gene (formerly Entrezgene);Acc:3766669] identity=22.9; qcov=0.823; evalue=1.14e-45; confidence=weak |
| Rice | Os06g0704400- identity=27.3; qcov=1; evalue=6.33e-85; confidence=low |
| GO | GO:0003676 (nucleic acid binding); GO:0008270 (zinc ion binding) |
| KEGG | - |
| Pfam | PF03108 (DBD_Tnp_Mut); PF04434 (SWIM); PF10551 (MULE) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130998290 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 1.00000 | XP_057779704.1 |
| 2 | Chromosome | 染色体 | 0.00000 | XP_057779704.1 |
| 3 | Centromere | 着丝粒 | 0.00000 | XP_057779704.1 |
| 4 | Chromatin | 染色质 | 0.00000 | XP_057779704.1 |
| 5 | Telomere | 端粒 | 0.00000 | XP_057779704.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr8:28987979 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | A11,A21,B83 |
Chr8:28988000 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B124 |
Chr8:28988109 |
C |
T |
EMS_canonical_SNV | stop_gained | 12 | B1,B103,B131,B40,B66,B82,C17,C19,C25,C65,C8,C82 |
Chr8:28988164 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | A22,A9,B20,B55 |
Chr8:28988181 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | C25,C82 |
Chr8:28988194 |
T |
TAG |
2bp_insertion | frameshift_variant | 9 | A18,B18,B5,B70,B72,C21,C67,C82,C87 |
Chr8:28988901 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | A24,C32 |
Chr8:28988916 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B132,B45 |
Chr8:28988917 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B132,B45 |
Chr8:28988962 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B28,B7,C46 |
Chr8:28988994 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B132,B45 |
Chr8:28989028 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B45 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057779704.1PF03108
DBD_Tnp_Mut 48-110 aa
PF10551
MULE 220-303 aa
PF04434
SWIM 455-484 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057779704.1 |
Pfam | PF03108 |
DBD_Tnp_Mut | Family | 48 | 110 | 3.9e-08 | 33.5 | MuDR family transposase |
XP_057779704.1 |
Pfam | PF10551 |
MULE | Domain | 220 | 303 | 3.6e-12 | 47.2 | MULE transposase domain |
XP_057779704.1 |
Pfam | PF04434 |
SWIM | Domain | 455 | 484 | 1.7e-08 | 34.5 | SWIM zinc finger |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。