Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr08G002908`

染色体: Chr08 坐标: 29055469-29059177 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr08G002908`
名称	SmilChr08G002908
描述	uncharacterized SmilChr08G002908
染色体 / SeqID	Chr08 / NC_080394.1
坐标与链方向	29055469 - 29059177 / `+`

ID 对照

NCBI Gene ID	`LOC130997512`
GeneID	`130997512`
locus_tag	`-`
NCBI Name	`LOC130997512`
原始查询	`SmilChr08G002908`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:829004]; symbol=AT4G28830; hit=AT4G28830; species=arabidopsis; confidence=high
产物	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:829004]; symbol=AT4G28830; hit=AT4G28830; species=arabidopsis; confidence=high
Arabidopsis	`AT4G28830` (AT4G28830) S-adenosyl-L-methionine-dependent methyltransferases superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:829004] identity=75.5; qcov=0.977; evalue=3.64e-116; confidence=high
Rice	`Os06g0162600` - identity=71.5; qcov=0.972; evalue=5.72e-114; confidence=high
GO	GO:0003676 (nucleic acid binding); GO:0008988 (rRNA (adenine-N6-)-methyltransferase activity); GO:0031167 (rRNA methylation)
KEGG	-
Pfam	PF01170 (UPF0020); PF03602 (Cons_hypoth95); PF05175 (MTS); PF06325 (PrmA); PF08241 (Methyltransf_11); PF13649 (Methyltransf_25); PF13847 (Methyltransf_31)
InterPro	-
eggNOG	-
NR	GeneID:130997512

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057778830.1`
2	Nucleolus	核仁	0.60000	`XP_057778830.1`
3	Cytoplasm	细胞质	0.60000	`XP_057778830.1`
4	Chromosome	染色体	0.00000	`XP_057778830.1`
5	Centromere	着丝粒	0.00000	`XP_057778830.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr8:29056311`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B40

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057778830.1

213 aa

106

213

PrmA

Cons_hypoth95

Methyltransf_31

MTS

UPF0020

Methyltransf_25

Methyltransf_11

PF06325 PrmA 29-121 aa PF03602 Cons_hypoth95 47-137 aa PF13847 Methyltransf_31 48-124 aa PF05175 MTS 48-131 aa PF01170 UPF0020 49-129 aa PF13649 Methyltransf_25 52-121 aa PF08241 Methyltransf_11 54-121 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057778830.1`	Pfam	`PF06325`	PrmA	Family	29	121	4.8e-12	46.7	Ribosomal protein L11 methyltransferase (PrmA)
`XP_057778830.1`	Pfam	`PF03602`	Cons_hypoth95	Family	47	137	2.2e-05	24.9	Conserved hypothetical protein 95
`XP_057778830.1`	Pfam	`PF13847`	Methyltransf_31	Domain	48	124	3e-13	50.5	Methyltransferase domain
`XP_057778830.1`	Pfam	`PF05175`	MTS	Domain	48	131	3.2e-14	53.6	Methyltransferase small domain
`XP_057778830.1`	Pfam	`PF01170`	UPF0020	Domain	49	129	2.5e-10	41.1	RMKL-like, methyltransferase domain
`XP_057778830.1`	Pfam	`PF13649`	Methyltransf_25	Domain	52	121	7.9e-13	49.6	Methyltransferase domain
`XP_057778830.1`	Pfam	`PF08241`	Methyltransf_11	Domain	54	121	6.7e-09	37.0	Methyltransferase domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057922847.1
TATTTTATTTTTTTTGCAAAACGAAAAAGGAAAAGAAACCTAGAAATGGATTTTCCTAAAAATAAACTTCGGCGGTGAGGACGAGGCCATTGACTCCAGCTCGCCACTACAAGCCGCCGCACCTCTTCCGCCCACTTAATCCATCTTCTCCAACCGGCGGCGGAGGCAAATTGAAATGAAGTTGAAGCAGTTGGAGAGCCTTCTCGGCTCACTTCAACAGTTCGACCACCCCAAGATTGAATTGGAGCAATATCCCACAG...

CDS

1 records

下载 CDS FASTA

LOC130997512
ATGAAGTTGAAGCAGTTGGAGAGCCTTCTCGGCTCACTTCAACAGTTCGACCACCCCAAGATTGAATTGGAGCAATATCCCACAGGACCCCACATCGCATCTCGCTTGCTCTACACTGCAGAGAATTCGTTCGGGGATTTGAGTGATAAGGTAGTGGCAGATTTCGGTTGTGGCTGCGGAACGCTAGGACTGGCTGCTGGTCTTTTGGGTGCAGAGCACGTTATTGGATTTGATATTGATCAGGAGTCTATCGAAATTGC...

Protein

1 records

下载 Protein FASTA

XP_057778830.1
MKLKQLESLLGSLQQFDHPKIELEQYPTGPHIASRLLYTAENSFGDLSDKVVADFGCGCGTLGLAAGLLGAEHVIGFDIDQESIEIATSNADELELDIDFVQCDISNLRLSDQHIDTVVMNPPFGTRKKGADMEFLSVALKVASRAVYSLHKTSTRDHIKRTAMREYNASSAEVLCELRFDVPQLYKFHKKKEVDVAVDLWRFVPRSDHGKRP

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

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