当前解析结果
SmilChr08G002950| 统一新 Gene ID | SmilChr08G002950 |
|---|---|
| 名称 | SmilChr08G002950 |
| 描述 | multiple C2 domain and transmembrane region protein 16 |
| 染色体 / SeqID | Chr08 / NC_080394.1 |
| 坐标与链方向 | 29517755 - 29521208 / + |
| NCBI Gene ID | LOC130997552 |
|---|---|
| GeneID | 130997552 |
| locus_tag | - |
| NCBI Name | LOC130997552 |
| 原始查询 | SmilChr08G002950 |
| 来源 | GFF basic annotation; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | multiple C2 domain and transmembrane region protein 16 |
| 产物 | multiple C2 domain and transmembrane region protein 16 |
| Arabidopsis | AT5G17980 (AT5G17980)C2 calcium/lipid-binding plant phosphoribosyltransferase family protein [Source:NCBI gene (formerly Entrezgene);Acc:831665] identity=63.8; qcov=1.07; evalue=0; confidence=high |
| Rice | Os04g0683800- identity=45.1; qcov=1.04; evalue=0; confidence=high |
| GO | - |
| KEGG | - |
| Pfam | PF00168 (C2); PF08372 (PRT_C) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130997552 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Endoplasmic reticulum | 内质网 | 0.60000 | XP_057778894.1 |
| 2 | Cell membrane | 细胞膜 | 0.40000 | XP_057778894.1 |
| 3 | Endoplasmic reticulum membrane | 内质网膜 | 0.40000 | XP_057778894.1 |
| 4 | Golgi apparatus | 高尔基体 | 0.20000 | XP_057778894.1 |
| 5 | Nucleus | 细胞核 | 0.00000 | XP_057778894.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr8:29518108 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B89,B99 |
Chr8:29518274 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B15,C15 |
Chr8:29518310 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C42 |
Chr8:29518536 |
CTG |
C |
2bp_deletion | frameshift_variant | 6 | B140,C22,C4,C40,C43,C87 |
Chr8:29518539 |
AT |
A |
1bp_deletion | frameshift_variant | 6 | B140,C22,C4,C40,C43,C87 |
Chr8:29518578 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B55 |
Chr8:29518797 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B107 |
Chr8:29519018 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B24,C31 |
Chr8:29519046 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C83 |
Chr8:29519090 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B40 |
Chr8:29519357 |
CAA |
C |
2bp_deletion | frameshift_variant | 1 | C69 |
Chr8:29519357 |
CAA |
C |
2bp_deletion | CDS_variant | 1 | C69 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057778894.1PF00168
C2 6-107 aa
PF00168
C2 271-373 aa
PF00168
C2 421-525 aa
PF00168
C2 575-680 aa
PF08372
PRT_C 827-983 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057778894.1 |
Pfam | PF00168 |
C2 | Domain | 6 | 107 | 5.2e-63 | 210.5 | C2 domain |
XP_057778894.1 |
Pfam | PF00168 |
C2 | Domain | 271 | 373 | 5.2e-63 | 210.5 | C2 domain |
XP_057778894.1 |
Pfam | PF00168 |
C2 | Domain | 421 | 525 | 5.2e-63 | 210.5 | C2 domain |
XP_057778894.1 |
Pfam | PF00168 |
C2 | Domain | 575 | 680 | 5.2e-63 | 210.5 | C2 domain |
XP_057778894.1 |
Pfam | PF08372 |
PRT_C | Family | 827 | 983 | 4.1e-68 | 228.8 | Plant phosphoribosyltransferase C-terminal |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。