Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID,以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因,再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。
示例

当前解析结果

SmilChr08G002960

染色体: Chr08 坐标: 29617503-29619307 链方向: - 类型: protein_coding

基本信息

统一新 Gene IDSmilChr08G002960
名称SmilChr08G002960
描述uncharacterized SmilChr08G002960
染色体 / SeqIDChr08 / NC_080394.1
坐标与链方向29617503 - 29619307 / -

ID 对照

NCBI Gene IDLOC130997560
GeneID130997560
locus_tag-
NCBI NameLOC130997560
原始查询SmilChr08G002960

查看完整 ID 对照表

功能注释

来源GFF basic annotation; Arabidopsis/Rice homolog
描述uncharacterized protein [Source:NCBI gene (formerly Entrezgene);Acc:824313]; symbol=AT3G51500; hit=AT3G51500; species=arabidopsis; confidence=medium
产物uncharacterized protein [Source:NCBI gene (formerly Entrezgene);Acc:824313]; symbol=AT3G51500; hit=AT3G51500; species=arabidopsis; confidence=medium
ArabidopsisAT3G51500 (AT3G51500)
uncharacterized protein [Source:NCBI gene (formerly Entrezgene);Acc:824313]
identity=58; qcov=0.591; evalue=8.31e-25; confidence=medium
RiceOs02g0193500
-
identity=38.9; qcov=0.966; evalue=4.8e-20; confidence=low
GO-
KEGG-
Pfam-
InterPro-
eggNOG-
NRGeneID:130997560

打开注释模块

亚细胞定位 Top 5

Rank定位位置中文ScoreProtein ID
1 Cytoplasm 细胞质 0.60000 XP_057778905.1
2 Cytosol 细胞质基质 0.60000 XP_057778905.1
3 Nucleus 细胞核 0.20000 XP_057778905.1
4 Cytoskeleton 细胞骨架 0.20000 XP_057778905.1
5 Spindle Spindle 0.20000 XP_057778905.1

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。

位置 REF ALT 类型 影响 携带材料数 材料
Chr8:29617682 G A EMS_canonical_SNV stop_gained 8 B104,B140,B35,C22,C4,C40,C43,D11
Chr8:29617852 C T EMS_canonical_SNV CDS_variant 1 C52
Chr8:29617860 G A EMS_canonical_SNV CDS_variant 2 B7,C33
Chr8:29617884 C T EMS_canonical_SNV CDS_variant 2 D10,D11
Chr8:29617967 G A EMS_canonical_SNV CDS_variant 2 A19,C9
Chr8:29618029 TCC T 2bp_deletion frameshift_variant 1 B82
Chr8:29618029 TCC T 2bp_deletion CDS_variant 1 B82

进入 EMS 突变库

预测功能结构域

当前发布数据中,此基因没有可展示的 Pfam 结构域命中。

进入结构域查询

cDNA / CDS / Protein 序列

下载基因组 DNA(仅基因区域)

每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA
XM_057922922.1
AAATAATTTTAATGATAGAATGCGCCAAAAGAAAAAGGAAATAGATAAGAAGAAGGGAGCAAGCCCAGTATATCACACCATAGCACAAAGAAAAGCCCAGACATGAGAATTAGATTTCTAAGTGAACAAGAAAAGTGAAGCCCATGATCAAACAGACTCGATTGCAATTGGGAATCTGTCGAAATAAACAAGTAGATCAGTGGGAAAATTTGGGAACCGACATCTGGTTGTTGACTGCTCTCGATTTTATTTGAGTTTCT...
XM_057922923.1
AAAAAGGAAATAGATAAGAAGAAGGGAGCAAGCCCAGTATATCACACCATAGCACAAAGAAAAGCCCAGACATGAGAATTAGATTTCTAAGTGAACAAGAAAAGTGAAGCCCATGATCAAACAGACTCGATTGCAATTGGGAATCTGTCGAAATAAACAAGTAGATCAGTGGGAAAATTTGGGAACCGACATCTGGTTGTTGACTGCTCTCGATTTTATTTGAGTTTCTTCTAAAGCACCGCCTTTCACCCTTTGTTTGC...

CDS

2 records

下载 CDS FASTA
LOC130997560
ATGGAAGATCAGAAGCACATGCCAGATGCTTTGCTTAGTAAGCCCAGAAAAAAGAAGGCTTCATCCCAGCACCCTGAAATGTTTCAATCACCTGGGGAGAGCATGAGCGTGAAGAGATCCAATGAGATACGGACATTCTCCCGCCAAAAGGGGCCAAAACCCACCAAAAGGGGCGTCGTTAATGAAGTCTCACCATCACTGCAACCAGAGAGACTGATCCCAGATTCAGTACAAGACTCCTCGACCTCAGGAAACGAGTA...
LOC130997560
ATGGAAGATCAGAAGCACATGCCAGATGCTTTGCTTAGTAAGCCCAGAAAAAAGAAGGCTTCATCCCAGCACCCTGAAATGTTTCAATCACCTGGGGAGAGCATGAGCGTGAAGAGATCCAATGAGATACGGACATTCTCCCGCCAAAAGGGGCCAAAACCCACCAAAAGGGGCGTCGTTAATGAAGTCTCACCATCACTGCAACCAGAGAGACTGATCCCAGATTCAGTACAAGACTCCTCGACCTCAGGAAACGAGTA...

Protein

2 records

下载 Protein FASTA
XP_057778905.1
MEDQKHMPDALLSKPRKKKASSQHPEMFQSPGESMSVKRSNEIRTFSRQKGPKPTKRGVVNEVSPSLQPERLIPDSVQDSSTSGNEYRALRRKYLLLEEESFGLGKELKEVEDDVKTLEEEKLSLLDELVVLEGLIDPSDIQSQAQRLQ
XP_057778906.1
MEDQKHMPDALLSKPRKKKASSQHPEMFQSPGESMSVKRSNEIRTFSRQKGPKPTKRGVVNEVSPSLQPERLIPDSVQDSSTSGNEYRALRRKYLLLEEESFGLGKELKEVEDDVKTLEEEKLSLLDELVVLEGLIDPSDIQSQAQRLQ

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

跳转到基因组浏览器