当前解析结果
SmilChr08G002960| 统一新 Gene ID | SmilChr08G002960 |
|---|---|
| 名称 | SmilChr08G002960 |
| 描述 | uncharacterized SmilChr08G002960 |
| 染色体 / SeqID | Chr08 / NC_080394.1 |
| 坐标与链方向 | 29617503 - 29619307 / - |
| NCBI Gene ID | LOC130997560 |
|---|---|
| GeneID | 130997560 |
| locus_tag | - |
| NCBI Name | LOC130997560 |
| 原始查询 | SmilChr08G002960 |
| 来源 | GFF basic annotation; Arabidopsis/Rice homolog |
|---|---|
| 描述 | uncharacterized protein [Source:NCBI gene (formerly Entrezgene);Acc:824313]; symbol=AT3G51500; hit=AT3G51500; species=arabidopsis; confidence=medium |
| 产物 | uncharacterized protein [Source:NCBI gene (formerly Entrezgene);Acc:824313]; symbol=AT3G51500; hit=AT3G51500; species=arabidopsis; confidence=medium |
| Arabidopsis | AT3G51500 (AT3G51500)uncharacterized protein [Source:NCBI gene (formerly Entrezgene);Acc:824313] identity=58; qcov=0.591; evalue=8.31e-25; confidence=medium |
| Rice | Os02g0193500- identity=38.9; qcov=0.966; evalue=4.8e-20; confidence=low |
| GO | - |
| KEGG | - |
| Pfam | - |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130997560 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytoplasm | 细胞质 | 0.60000 | XP_057778905.1 |
| 2 | Cytosol | 细胞质基质 | 0.60000 | XP_057778905.1 |
| 3 | Nucleus | 细胞核 | 0.20000 | XP_057778905.1 |
| 4 | Cytoskeleton | 细胞骨架 | 0.20000 | XP_057778905.1 |
| 5 | Spindle | Spindle | 0.20000 | XP_057778905.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr8:29617682 |
G |
A |
EMS_canonical_SNV | stop_gained | 8 | B104,B140,B35,C22,C4,C40,C43,D11 |
Chr8:29617852 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C52 |
Chr8:29617860 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B7,C33 |
Chr8:29617884 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | D10,D11 |
Chr8:29617967 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | A19,C9 |
Chr8:29618029 |
TCC |
T |
2bp_deletion | frameshift_variant | 1 | B82 |
Chr8:29618029 |
TCC |
T |
2bp_deletion | CDS_variant | 1 | B82 |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
2 records
下载 cDNA FASTA2 records
下载 CDS FASTA2 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。