Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr08G002997`

染色体: Chr08 坐标: 30071188-30077870 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr08G002997`
名称	SmilChr08G002997
描述	arginine biosynthesis bifunctional protein ArgJ, chloroplastic
染色体 / SeqID	Chr08 / NC_080394.1
坐标与链方向	30071188 - 30077870 / `+`

ID 对照

NCBI Gene ID	`LOC130997594`
GeneID	`130997594`
locus_tag	`-`
NCBI Name	`LOC130997594`
原始查询	`SmilChr08G002997`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	arginine biosynthesis bifunctional protein ArgJ, chloroplastic
产物	arginine biosynthesis bifunctional protein ArgJ%2C chloroplastic
Arabidopsis	`AT2G37500` (AT2G37500) arginine biosynthesis protein ArgJ family [Source:NCBI gene (formerly Entrezgene);Acc:818326] identity=77; qcov=0.903; evalue=0; confidence=high
Rice	`Os03g0279400` - identity=74.3; qcov=0.903; evalue=0; confidence=high
GO	GO:0004042 (L-glutamate N-acetyltransferase activity, acting on acetyl-CoA as donor); GO:0004358 (L-glutamate N-acetyltransferase activity, acting on acetyl-L-ornithine as donor); GO:0006526 (L-arginine biosynthetic process); GO:0006592 (L-ornithine biosynthetic process)
KEGG	smil00220 (Arginine biosynthesis - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage)); smil01110 (Biosynthesis of secondary metabolites - Salvia miltiorrhiza (redroot sage)); smil01210 (2-Oxocarboxylic acid metabolism - Salvia miltiorrhiza (redroot sage)); smil01230 (Biosynthesis of amino acids - Salvia miltiorrhiza (redroot sage))
Pfam	PF01960 (ArgJ)
InterPro	-
eggNOG	-
NR	GeneID:130997594

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Chloroplast	叶绿体	1.00000	`XP_057778944.1`
2	Cytoplasm	细胞质	1.00000	`XP_057778946.1`
3	Chloroplast stroma	叶绿体基质	1.00000	`XP_057778944.1`
4	Cytosol	细胞质基质	1.00000	`XP_057778946.1`
5	Nucleus	细胞核	0.00000	`XP_057778944.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr8:30071436`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B107
`Chr8:30071705`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B122,B40,D4
`Chr8:30072662`	`T`	`TAA`	2bp_insertion	frameshift_variant	1	C87
`Chr8:30072662`	`T`	`TAA`	2bp_insertion	CDS_variant	1	C87
`Chr8:30073333`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	B121,B13,B46,B79,C49
`Chr8:30073906`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B100
`Chr8:30076375`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	D11
`Chr8:30076932`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B17,C11,C69
`Chr8:30076986`	`C`	`T`	EMS_canonical_SNV	stop_gained	4	B121,B43,C4,D1
`Chr8:30076986`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B121,B43,C4,D1
`Chr8:30077283`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B77

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057778944.1

470 aa

235

470

ArgJ

PF01960 ArgJ 76-470 aa

XP_057778945.1

457 aa

228

457

ArgJ

PF01960 ArgJ 76-457 aa

XP_057778946.1

452 aa

226

452

ArgJ

PF01960 ArgJ 58-452 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057778944.1`	Pfam	`PF01960`	ArgJ	Family	76	470	3e-138	461.3	ArgJ family
`XP_057778945.1`	Pfam	`PF01960`	ArgJ	Family	76	457	1.2e-125	419.9	ArgJ family
`XP_057778946.1`	Pfam	`PF01960`	ArgJ	Family	58	452	2.6e-138	461.5	ArgJ family

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

3 records

下载 cDNA FASTA

XM_057922961.1
CAAACATTGTAAATGCAGAAAAGAAAAGAAAAGTAAGAAACCAATAAGTTGACGTTTGTGATTTGTGAATTTTGAGAATCTGAGGAATATACAGTAGTGTTCGACGCCCACTTCCACTCAAACTCAAAATCCAAAGTCTTGCTAAACCCTAAATTAAATTACTACTAAATTGGTTTTCCTCCCTCCCGCTCCAGGCGTCAACAATGTCTCTCTACGTTTCTCACCATTTCACCCTCAAATTCTCCGGACTCAATCAATCC...

XM_057922962.1
ACATTGTAAATGCAGAAAAGAAAAGAAAAGTAAGAAACCAATAAGTTGACGTTTGTGATTTGTGAATTTTGAGAATCTGAGGAATATACAGTAGTGTTCGACGCCCACTTCCACTCAAACTCAAAATCCAAAGTCTTGCTAAACCCTAAATTAAATTACTACTAAATTGGTTTTCCTCCCTCCCGCTCCAGGCGTCAACAATGTCTCTCTACGTTTCTCACCATTTCACCCTCAAATTCTCCGGACTCAATCAATCCAAG...

CDS

3 records

下载 CDS FASTA

LOC130997594
ATGTCTCTCTACGTTTCTCACCATTTCACCCTCAAATTCTCCGGACTCAATCAATCCAAGATATCTTACTCAGCAAGTCGTTTGAGAATGAATAGCTGCAGAATTTTTGCGGCAGTGTCTGTTGGAGAGGATGTGTCGAATTACATACCAGCAGCTCCTATATTGCTGCCTGAAGGGCCATGGCATCAGATTCCAGGTGGAGTTACAGCTGCAAAGGGTTTCAAAGCTGCTGGGATGTATGGTGGACTGCGTGCAGTTGG...

Protein

3 records

下载 Protein FASTA

XP_057778944.1
MSLYVSHHFTLKFSGLNQSKISYSASRLRMNSCRIFAAVSVGEDVSNYIPAAPILLPEGPWHQIPGGVTAAKGFKAAGMYGGLRAVGEKPDLALVTCDVDAVSAGTFTTNVVAAAPVLYCKEALEKSATGRAVLINAGQANAATGDAGYQDVIECSHALAELLQLKPDQVLIESTGVIGKRIKKEALLKSLPDLVNLLSSTIQGADSAAVAITTTDLVSKSIAIESEVGGKQVRIGGMAKGSGMIHPNMATMLGVITTDA...

XP_057778945.1
MSLYVSHHFTLKFSGLNQSKISYSASRLRMNSCRIFAAVSVGEDVSNYIPAAPILLPEGPWHQIPGGVTAAKGFKAAGMYGGLRAVGEKPDLALVTCDVDAVSAGTFTTNVVAAAPVLYCKEALEKSATGRAVLINAGQANAATGDAGYQDVIECSHALAELLQLKPDQVLIESTGVIGKRIKKEALLKSLPDLVNLLSSTIQGADSAAVAITTTDLVSKSIAIESEVGGKQVRIGGMAKGSGMIHPNMATMLGVITTDA...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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