当前解析结果
SmilChr08G003007| 统一新 Gene ID | SmilChr08G003007 |
|---|---|
| 名称 | SmilChr08G003007 |
| 描述 | type I inositol polyphosphate 5-phosphatase 8-like |
| 染色体 / SeqID | Chr08 / NC_080394.1 |
| 坐标与链方向 | 30170168 - 30175108 / - |
| NCBI Gene ID | LOC130997606 |
|---|---|
| GeneID | 130997606 |
| locus_tag | - |
| NCBI Name | LOC130997606 |
| 原始查询 | SmilChr08G003007 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | type I inositol polyphosphate 5-phosphatase 8-like |
| 产物 | type I inositol polyphosphate 5-phosphatase 8-like |
| Arabidopsis | AT2G37440 (AT2G37440)DNAse I-like superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:818321] identity=59.2; qcov=1.01; evalue=0; confidence=high |
| Rice | Os05g0114100- identity=58.1; qcov=0.888; evalue=3.45e-138; confidence=high |
| GO | GO:0004439 (phosphatidylinositol-4,5-bisphosphate 5-phosphatase activity); GO:0004445 (inositol-polyphosphate 5-phosphatase activity); GO:0034485 (phosphatidylinositol-3,4,5-trisphosphate 5-phosphatase activity); GO:0046856 (phosphatidylinositol dephosphorylation) |
| KEGG | - |
| Pfam | PF03372 (Exo_endo_phos); PF22669 (Exo_endo_phos2) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130997606 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytoplasm | 细胞质 | 0.80000 | XP_057778958.1 |
| 2 | Cytosol | 细胞质基质 | 0.40000 | XP_057778958.1 |
| 3 | Nucleus | 细胞核 | 0.00000 | XP_057778958.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057778958.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057778958.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr8:30170348 |
A |
ATG |
2bp_insertion | frameshift_variant | 6 | B128,B136,C10,C6,C79,C81 |
Chr8:30171107 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C87 |
Chr8:30171178 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B97 |
Chr8:30171381 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B102 |
Chr8:30171863 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C51 |
Chr8:30171935 |
AT |
A |
1bp_deletion | frameshift_variant | 5 | A18,B33,B49,C32,C68 |
Chr8:30171935 |
AT |
A |
1bp_deletion | CDS_variant | 5 | A18,B33,B49,C32,C68 |
Chr8:30171941 |
ATT |
A |
2bp_deletion | frameshift_variant | 5 | A18,B33,B49,C32,C68 |
Chr8:30171941 |
ATT |
A |
2bp_deletion | CDS_variant | 5 | A18,B33,B49,C32,C68 |
Chr8:30171946 |
T |
TC |
1bp_insertion | frameshift_variant | 5 | A18,B33,B49,C32,C68 |
Chr8:30171946 |
T |
TC |
1bp_insertion | CDS_variant | 5 | A18,B33,B49,C32,C68 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057778958.1PF03372
Exo_endo_phos 95-417 aa
PF22669
Exo_endo_phos2 95-422 aa
XP_057778959.1PF03372
Exo_endo_phos 95-417 aa
PF22669
Exo_endo_phos2 95-422 aa
XP_057778960.1PF03372
Exo_endo_phos 94-416 aa
PF22669
Exo_endo_phos2 94-421 aa
XP_057778961.1PF03372
Exo_endo_phos 94-416 aa
PF22669
Exo_endo_phos2 94-421 aa
XP_057778963.1PF03372
Exo_endo_phos 94-416 aa
PF22669
Exo_endo_phos2 94-421 aa
XP_057778964.1PF03372
Exo_endo_phos 93-415 aa
PF22669
Exo_endo_phos2 93-420 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057778958.1 |
Pfam | PF03372 |
Exo_endo_phos | Domain | 95 | 417 | 2.3e-06 | 28.3 | Endonuclease/Exonuclease/phosphatase family |
XP_057778958.1 |
Pfam | PF22669 |
Exo_endo_phos2 | Domain | 95 | 422 | 1.3e-71 | 242.2 | Endonuclease/Exonuclease/phosphatase family 2 |
XP_057778959.1 |
Pfam | PF03372 |
Exo_endo_phos | Domain | 95 | 417 | 2.3e-06 | 28.3 | Endonuclease/Exonuclease/phosphatase family |
XP_057778959.1 |
Pfam | PF22669 |
Exo_endo_phos2 | Domain | 95 | 422 | 1.3e-71 | 242.2 | Endonuclease/Exonuclease/phosphatase family 2 |
XP_057778960.1 |
Pfam | PF03372 |
Exo_endo_phos | Domain | 94 | 416 | 2.3e-06 | 28.3 | Endonuclease/Exonuclease/phosphatase family |
XP_057778960.1 |
Pfam | PF22669 |
Exo_endo_phos2 | Domain | 94 | 421 | 1.3e-71 | 242.3 | Endonuclease/Exonuclease/phosphatase family 2 |
XP_057778961.1 |
Pfam | PF03372 |
Exo_endo_phos | Domain | 94 | 416 | 2.3e-06 | 28.3 | Endonuclease/Exonuclease/phosphatase family |
XP_057778961.1 |
Pfam | PF22669 |
Exo_endo_phos2 | Domain | 94 | 421 | 1.3e-71 | 242.2 | Endonuclease/Exonuclease/phosphatase family 2 |
XP_057778963.1 |
Pfam | PF03372 |
Exo_endo_phos | Domain | 94 | 416 | 2.3e-06 | 28.3 | Endonuclease/Exonuclease/phosphatase family |
XP_057778963.1 |
Pfam | PF22669 |
Exo_endo_phos2 | Domain | 94 | 421 | 1.3e-71 | 242.2 | Endonuclease/Exonuclease/phosphatase family 2 |
XP_057778964.1 |
Pfam | PF03372 |
Exo_endo_phos | Domain | 93 | 415 | 2.3e-06 | 28.3 | Endonuclease/Exonuclease/phosphatase family |
XP_057778964.1 |
Pfam | PF22669 |
Exo_endo_phos2 | Domain | 93 | 420 | 1.3e-71 | 242.3 | Endonuclease/Exonuclease/phosphatase family 2 |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
6 records
下载 cDNA FASTA6 records
下载 CDS FASTA6 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。