Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID,以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因,再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。
示例

当前解析结果

SmilChr08G003033

染色体: Chr08 坐标: 30486463-30494585 链方向: - 类型: protein_coding

基本信息

统一新 Gene IDSmilChr08G003033
名称SmilChr08G003033
描述uncharacterized SmilChr08G003033
染色体 / SeqIDChr08 / NC_080394.1
坐标与链方向30486463 - 30494585 / -

ID 对照

NCBI Gene IDLOC130997635
GeneID130997635
locus_tag-
NCBI NameLOC130997635
原始查询SmilChr08G003033

查看完整 ID 对照表

功能注释

来源GFF basic annotation; Arabidopsis/Rice homolog
描述structural maintenance of chromosomes protein [Source:NCBI gene (formerly Entrezgene);Acc:831200]; symbol=AT5G13560; hit=AT5G13560; species=arabidopsis; confidence=high
产物structural maintenance of chromosomes protein [Source:NCBI gene (formerly Entrezgene);Acc:831200]; symbol=AT5G13560; hit=AT5G13560; species=arabidopsis; confidence=high
ArabidopsisAT5G13560 (AT5G13560)
structural maintenance of chromosomes protein [Source:NCBI gene (formerly Entrezgene);Acc:831200]
identity=45.6; qcov=0.889; evalue=2.42e-140; confidence=high
RiceOs05g0162200
-
identity=42.9; qcov=0.868; evalue=4.91e-115; confidence=medium
GO-
KEGG-
Pfam-
InterPro-
eggNOG-
NRGeneID:130997635

打开注释模块

亚细胞定位 Top 5

Rank定位位置中文ScoreProtein ID
1 Cytosol 细胞质基质 0.60000 XP_057779009.1
2 Nucleus 细胞核 0.60000 XP_057779011.1
3 Cytoplasm 细胞质 0.40000 XP_057779009.1
4 Cell membrane 细胞膜 0.40000 XP_057779010.1
5 Nucleus membrane 核膜 0.20000 XP_057779011.1

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。

位置 REF ALT 类型 影响 携带材料数 材料
Chr8:30487038 C T EMS_canonical_SNV CDS_variant 5 B122,B56,B96,C39,D4
Chr8:30487075 CCT C 2bp_deletion frameshift_variant 5 B31,B59,B91,C36,C87
Chr8:30487075 CCT C 2bp_deletion CDS_variant 5 B31,B59,B91,C36,C87
Chr8:30487235 C T EMS_canonical_SNV CDS_variant 4 A20,A25,B123,B37
Chr8:30487265 C T EMS_canonical_SNV CDS_variant 4 A20,A25,B123,B37
Chr8:30488078 C T EMS_canonical_SNV stop_gained 9 A16,B13,B136,B139,B26,B45,B86,B87,C72
Chr8:30489417 C T EMS_canonical_SNV CDS_variant 2 A16,D7
Chr8:30489785 C T EMS_canonical_SNV CDS_variant 1 C62
Chr8:30490558 G A EMS_canonical_SNV CDS_variant 1 B61
Chr8:30491968 G A EMS_canonical_SNV CDS_variant 1 B88
Chr8:30492656 G A EMS_canonical_SNV CDS_variant 1 B86

进入 EMS 突变库

预测功能结构域

当前发布数据中,此基因没有可展示的 Pfam 结构域命中。

进入结构域查询

cDNA / CDS / Protein 序列

下载基因组 DNA(仅基因区域)

每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

3 records

下载 cDNA FASTA
XM_057923027.1
TCAACTTTCCATAAACATCAAATTTATACGTTCTCCGATTCAATTCTCTCTCTCTGGCTTTTGCCTCAGAAAAACAAACACCACATATACCGCAATTTGTAAGATGTCGTGGCTCCGATCGGCCGTGAATAAGGCGGTGGAAGTCGGTGGCCAAAACAGCGTTAGCCGCGTCGTGCGAAGCTATGCTGGCACCGTCGTCAATACCGCTCTGTTCCTAGATAACTCTGGTGCTCGGAATTTCCAAAGCTATAAGCTTGCAG...
XM_057923026.1
TCAACTTTCCATAAACATCAAATTTATACGTTCTCCGATTCAATTCTCTCTCTCTGGCTTTTGCCTCAGAAAAACAAACACCACATATACCGCAATTTGTAAGATGTCGTGGCTCCGATCGGCCGTGAATAAGGCGGTGGAAGTCGGTGGCCAAAACAGCGTTAGCCGCGTCGTGCGAAGCTATGCTGGCACCGTCGTCAATACCGCTCTGTTCCTAGATAACTCTGGTGCTCGGAATTTCCAAAGCTATAAGCTTGCAG...

CDS

3 records

下载 CDS FASTA
LOC130997635
ATGTCGTGGCTCCGATCGGCCGTGAATAAGGCGGTGGAAGTCGGTGGCCAAAACAGCGTTAGCCGCGTCGTGCGAAGCTATGCTGGCACCGTCGTCAATACCGCTCTGTTCCTAGATAACTCTGGTGCTCGGAATTTCCAAAGCTATAAGCTTGCAGTAAAGCGACTAGAAGAAGTATCTGTTTCTTGTAAGGGAGTAGAAAGAGTTCAGTTATTAGGAAGGTGGTTAGTTGCCTTGAAACAGATAGAGATACTTAATGA...
LOC130997635
ATGTCGTGGCTCCGATCGGCCGTGAATAAGGCGGTGGAAGTCGGTGGCCAAAACAGCGTTAGCCGCGTCGTGCGAAGCTATGCTGGCACCGTCGTCAATACCGCTCTGTTCCTAGATAACTCTGGTGCTCGGAATTTCCAAAGCTATAAGCTTGCAGTAAAGCGACTAGAAGAAGTATCTGTTTCTTGTAAGGGAGTAGAAAGAGTTCAGTTATTAGGAAGGTGGTTAGTTGCCTTGAAACAGATAGAGATACTTAATGA...

Protein

3 records

下载 Protein FASTA
XP_057779009.1
MSWLRSAVNKAVEVGGQNSVSRVVRSYAGTVVNTALFLDNSGARNFQSYKLAVKRLEEVSVSCKGVERVQLLGRWLVALKQIEILNEAADTDHSPKPTVVMYYDPDLGGEPMNFRDVFLQSQALEGITLSLILEEPNQEELSLLQGIFRLSLMGGREALDVTVSSVQDLAKAFSTYNEEVLAKRTELLQFVQDAMSGLKVNAEIVRIDSELSSIHKRLHGMKNELSSEKSYEMSKECLNEALAHVRSCSRLVELLSRKKL...
XP_057779010.1
MSWLRSAVNKAVEVGGQNSVSRVVRSYAGTVVNTALFLDNSGARNFQSYKLAVKRLEEVSVSCKGVERVQLLGRWLVALKQIEILNEAADTDHSPKPTVVMYYDPDLGGEPMNFRDVFLQSQALEGITLSLILEEPNQEELSLLQGIFRLSLMGGREALDVTVSSVQDLAKAFSTYNEEVLAKRTELLQFVQDAMSGLKVNAEIVRIDSELSSIHKRLHGMKNELSSEKSYEMSKECLNEALAHVRSCSRLVELLSRKKL...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。

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