当前解析结果
SmilChr08G003033| 统一新 Gene ID | SmilChr08G003033 |
|---|---|
| 名称 | SmilChr08G003033 |
| 描述 | uncharacterized SmilChr08G003033 |
| 染色体 / SeqID | Chr08 / NC_080394.1 |
| 坐标与链方向 | 30486463 - 30494585 / - |
| NCBI Gene ID | LOC130997635 |
|---|---|
| GeneID | 130997635 |
| locus_tag | - |
| NCBI Name | LOC130997635 |
| 原始查询 | SmilChr08G003033 |
| 来源 | GFF basic annotation; Arabidopsis/Rice homolog |
|---|---|
| 描述 | structural maintenance of chromosomes protein [Source:NCBI gene (formerly Entrezgene);Acc:831200]; symbol=AT5G13560; hit=AT5G13560; species=arabidopsis; confidence=high |
| 产物 | structural maintenance of chromosomes protein [Source:NCBI gene (formerly Entrezgene);Acc:831200]; symbol=AT5G13560; hit=AT5G13560; species=arabidopsis; confidence=high |
| Arabidopsis | AT5G13560 (AT5G13560)structural maintenance of chromosomes protein [Source:NCBI gene (formerly Entrezgene);Acc:831200] identity=45.6; qcov=0.889; evalue=2.42e-140; confidence=high |
| Rice | Os05g0162200- identity=42.9; qcov=0.868; evalue=4.91e-115; confidence=medium |
| GO | - |
| KEGG | - |
| Pfam | - |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130997635 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytosol | 细胞质基质 | 0.60000 | XP_057779009.1 |
| 2 | Nucleus | 细胞核 | 0.60000 | XP_057779011.1 |
| 3 | Cytoplasm | 细胞质 | 0.40000 | XP_057779009.1 |
| 4 | Cell membrane | 细胞膜 | 0.40000 | XP_057779010.1 |
| 5 | Nucleus membrane | 核膜 | 0.20000 | XP_057779011.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr8:30487038 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | B122,B56,B96,C39,D4 |
Chr8:30487075 |
CCT |
C |
2bp_deletion | frameshift_variant | 5 | B31,B59,B91,C36,C87 |
Chr8:30487075 |
CCT |
C |
2bp_deletion | CDS_variant | 5 | B31,B59,B91,C36,C87 |
Chr8:30487235 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | A20,A25,B123,B37 |
Chr8:30487265 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | A20,A25,B123,B37 |
Chr8:30488078 |
C |
T |
EMS_canonical_SNV | stop_gained | 9 | A16,B13,B136,B139,B26,B45,B86,B87,C72 |
Chr8:30489417 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | A16,D7 |
Chr8:30489785 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C62 |
Chr8:30490558 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B61 |
Chr8:30491968 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B88 |
Chr8:30492656 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B86 |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
3 records
下载 cDNA FASTA3 records
下载 CDS FASTA3 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。