Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr08G003068`

染色体: Chr08 坐标: 30864683-30866791 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr08G003068`
名称	SmilChr08G003068
描述	60S ribosomal protein L4-1-like
染色体 / SeqID	Chr08 / NC_080394.1
坐标与链方向	30864683 - 30866791 / `+`

ID 对照

NCBI Gene ID	`LOC130997643`
GeneID	`130997643`
locus_tag	`-`
NCBI Name	`LOC130997643`
原始查询	`SmilChr08G003068`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	60S ribosomal protein L4-1-like
产物	60S ribosomal protein L4-1-like
Arabidopsis	`AT3G09630` (AT3G09630) Ribosomal protein L4/L1 family [Source:NCBI gene (formerly Entrezgene);Acc:820120] identity=82.4; qcov=0.938; evalue=0; confidence=high
Rice	`Os07g0180900` - identity=72.7; qcov=0.933; evalue=0; confidence=high
GO	GO:0003723 (RNA binding); GO:0003735 (structural constituent of ribosome); GO:0005840 (ribosome); GO:0006412 (translation); GO:0022625 (cytosolic large ribosomal subunit)
KEGG	smil03010 (Ribosome - Salvia miltiorrhiza (redroot sage))
Pfam	PF00573 (Ribosomal_L4); PF14374 (Ribos_L4_asso_C)
InterPro	-
eggNOG	-
NR	GeneID:130997643

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cytoplasm	细胞质	1.00000	`XP_057779019.1`
2	Cytosol	细胞质基质	0.60000	`XP_057779019.1`
3	Nucleus	细胞核	0.00000	`XP_057779019.1`
4	Chromosome	染色体	0.00000	`XP_057779019.1`
5	Centromere	着丝粒	0.00000	`XP_057779019.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr8:30864736`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B4,C46
`Chr8:30864783`	`GT`	`G`	1bp_deletion	frameshift_variant	5	B101,B50,C17,C65,C74
`Chr8:30864783`	`GT`	`G`	1bp_deletion	CDS_variant	5	B101,B50,C17,C65,C74
`Chr8:30864794`	`TC`	`T`	1bp_deletion	frameshift_variant	1	C84
`Chr8:30864794`	`TC`	`T`	1bp_deletion	CDS_variant	1	C84
`Chr8:30864825`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	C39,D4
`Chr8:30864826`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	C39,D4
`Chr8:30865094`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	A16,B33,C46
`Chr8:30865127`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B33
`Chr8:30865186`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	A18,B33
`Chr8:30865442`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B103,B62
`Chr8:30865488`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	D2

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057779019.1

409 aa

204

409

Ribosomal_L4

Ribos_L4_asso_C

PF00573 Ribosomal_L4 32-271 aa PF14374 Ribos_L4_asso_C 284-356 aa

XP_057779020.1

436 aa

218

436

Ribosomal_L4

Ribos_L4_asso_C

PF00573 Ribosomal_L4 59-298 aa PF14374 Ribos_L4_asso_C 311-383 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057779019.1`	Pfam	`PF00573`	Ribosomal_L4	Family	32	271	3.9e-35	121.9	Ribosomal protein L4/L1 family
`XP_057779019.1`	Pfam	`PF14374`	Ribos_L4_asso_C	Domain	284	356	2.3e-28	98.7	60S ribosomal protein L4 C-terminal domain
`XP_057779020.1`	Pfam	`PF00573`	Ribosomal_L4	Family	59	298	4.7e-35	121.7	Ribosomal protein L4/L1 family
`XP_057779020.1`	Pfam	`PF14374`	Ribos_L4_asso_C	Domain	311	383	2.7e-28	98.5	60S ribosomal protein L4 C-terminal domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057923037.1
TGGGCCCATATGCCCATTAACGCAGGCCCAATAATAATAATGCAGAATGTCCACTATAAATTTCTCCCTCTCTGCAAACCCTATTTTTTCACTCTTAGTTGTTTTCCCGTATCCAGCCCCCGGGAAAATGGCCGCCGCCGCCGCCCGCCCCCTCGTCACCGTGCAGTCCCTGGAGAACGATATGGCCACCGACGGAGGAGCCGCAGCCAACTGCCTGCCTCTTCCTGACGTAATGAAAGCCGCTATCCGCCCCGACATCG...

XM_057923036.1
CTATTTTTTCACTCTTAGTTGTTTTCCCGTATCCAGCCCCCGGGAAAATGGCCGCCGCCGCCGCCCGCCCCCTCGTCACCGTGCAGTCCCTGGAGAACGATATGGCCACCGACGGAGGAGCCGCAGCCAACTGCCTGCCTCTTCCTGACGTAATGAAAGCCGCTATCCGCCCCGACATCGTCACGTTCGTGCACGGCCAGATCTCCAACAACGCCCGGCAGCCTTACGCCGTCTCCAAACGCGCCGGCCACCAGACCTCT...

CDS

2 records

下载 CDS FASTA

LOC130997643
ATGTCCACTATAAATTTCTCCCTCTCTGCAAACCCTATTTTTTCACTCTTAGTTGTTTTCCCGTATCCAGCCCCCGGGAAAATGGCCGCCGCCGCCGCCCGCCCCCTCGTCACCGTGCAGTCCCTGGAGAACGATATGGCCACCGACGGAGGAGCCGCAGCCAACTGCCTGCCTCTTCCTGACGTAATGAAAGCCGCTATCCGCCCCGACATCGTCACGTTCGTGCACGGCCAGATCTCCAACAACGCCCGGCAGCCTTA...

LOC130997643
ATGGCCGCCGCCGCCGCCCGCCCCCTCGTCACCGTGCAGTCCCTGGAGAACGATATGGCCACCGACGGAGGAGCCGCAGCCAACTGCCTGCCTCTTCCTGACGTAATGAAAGCCGCTATCCGCCCCGACATCGTCACGTTCGTGCACGGCCAGATCTCCAACAACGCCCGGCAGCCTTACGCCGTCTCCAAACGCGCCGGCCACCAGACCTCTGCCGAGTCCTGGGGTACCGGCCGTGCAGTCTCCCGTATCCCCCGTGT...

Protein

2 records

下载 Protein FASTA

XP_057779019.1
MAAAAARPLVTVQSLENDMATDGGAAANCLPLPDVMKAAIRPDIVTFVHGQISNNARQPYAVSKRAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTKIWRRWHRAVNVTQKRHAVVSAIAASAVPSLVLARGHKIEEVPELPLVVSDSAEAVEKTSAALKILKQIGALADAEKAKDSQGIRAGKGKMRNRRYISRKGPLIVYGNEGSKLVKAFRNIPGVDIAHVSRLNLLKLAPGGHLGRFIV...

XP_057779020.1
MSTINFSLSANPIFSLLVVFPYPAPGKMAAAAARPLVTVQSLENDMATDGGAAANCLPLPDVMKAAIRPDIVTFVHGQISNNARQPYAVSKRAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTKIWRRWHRAVNVTQKRHAVVSAIAASAVPSLVLARGHKIEEVPELPLVVSDSAEAVEKTSAALKILKQIGALADAEKAKDSQGIRAGKGKMRNRRYISRKGPLIVYGNEGSKLVKAFRNI...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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