Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及有 accession 序列支持的文献基因名查询；未闭环名称仅提供候选导航。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr08G003081`

染色体: Chr08 坐标: 31040013-31043707 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr08G003081`
名称	SmilChr08G003081
描述	putative pentatricopeptide repeat-containing protein At5g09950
染色体 / SeqID	Chr08 / NC_080394.1
坐标与链方向	31040013 - 31043707 / `+`

ID 对照

NCBI Gene ID	`LOC130997625`
GeneID	`130997625`
locus_tag	`-`
NCBI Name	`LOC130997625`
原始查询	`SmilChr08G003081`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	putative pentatricopeptide repeat-containing protein At5g09950
产物	putative pentatricopeptide repeat-containing protein At5g09950
Arabidopsis	`AT5G09950` (MEF7) Tetratricopeptide repeat (TPR)-like superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:830856] identity=59.59; qcov=0.912; evalue=0.0; confidence=high
Rice	`Os01g0589900` - identity=52.58; qcov=0.914; evalue=0.0; confidence=high
GO	GO:0003723 (RNA binding); GO:0005515 (protein binding); GO:0008270 (zinc ion binding); GO:0009451 (RNA modification)
KEGG	-
Pfam	PF01535 (PPR); PF12854 (PPR_1); PF13041 (PPR_2); PF13812 (PPR_3); PF14432 (DYW_deaminase); PF20430 (Eplus_motif); PF20431 (E_motif)
InterPro	-
eggNOG	-
NR	GeneID:130997625

打开注释模块

非零投票定位候选（最多五项）

Rank	定位位置	中文	五折投票比例	Protein ID
1	Mitochondrion	线粒体	1.00000	`XP_057778994.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr8:31040386`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	B100,B107,B17,C13,C84
`Chr8:31040473`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	A16,B4,C36,C46,D7
`Chr8:31040588`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B100,B15,C15
`Chr8:31040742`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C59
`Chr8:31040984`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	D11
`Chr8:31041212`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B102
`Chr8:31041275`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D11
`Chr8:31041364`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B23
`Chr8:31041447`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B56,B96,C39,D4
`Chr8:31041605`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B56,B96,C39,D4
`Chr8:31041779`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B100,B15,C15
`Chr8:31041827`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B107,C87

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057778994.1

1075 aa

538

1075

PPR

PPR_1

PPR_2

PPR_3

PPR

PPR_2

PPR_3

PPR

E_motif

Eplus_motif

DYW_deaminase

PF01535 PPR 116-142 aa PF01535 PPR 144-174 aa PF12854 PPR_1 248-276 aa PF13041 PPR_2 249-297 aa PF13812 PPR_3 249-298 aa PF01535 PPR 251-280 aa PF01535 PPR 332-357 aa PF01535 PPR 360-384 aa PF01535 PPR 437-461 aa PF01535 PPR 465-495 aa PF01535 PPR 538-562 aa PF01535 PPR 669-697 aa PF01535 PPR 741-767 aa PF13041 PPR_2 766-814 aa PF13812 PPR_3 767-813 aa PF01535 PPR 769-796 aa PF01535 PPR 804-832 aa PF20431 E_motif 890-947 aa PF20430 Eplus_motif 953-980 aa PF14432 DYW_deaminase 984-1075 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057778994.1`	Pfam	`PF01535`	PPR	Repeat	116	142	1.4e-71	232.5	PPR repeat
`XP_057778994.1`	Pfam	`PF01535`	PPR	Repeat	144	174	1.4e-71	232.5	PPR repeat
`XP_057778994.1`	Pfam	`PF12854`	PPR_1	Repeat	248	276	1.5e-42	143.7	PPR repeat
`XP_057778994.1`	Pfam	`PF13041`	PPR_2	Repeat	249	297	9.9e-82	269.6	PPR repeat family
`XP_057778994.1`	Pfam	`PF13812`	PPR_3	Repeat	249	298	2.4e-23	82.7	Pentatricopeptide repeat domain
`XP_057778994.1`	Pfam	`PF01535`	PPR	Repeat	251	280	1.4e-71	232.5	PPR repeat
`XP_057778994.1`	Pfam	`PF01535`	PPR	Repeat	332	357	1.4e-71	232.5	PPR repeat
`XP_057778994.1`	Pfam	`PF01535`	PPR	Repeat	360	384	1.4e-71	232.5	PPR repeat
`XP_057778994.1`	Pfam	`PF01535`	PPR	Repeat	437	461	1.4e-71	232.5	PPR repeat
`XP_057778994.1`	Pfam	`PF01535`	PPR	Repeat	465	495	1.4e-71	232.5	PPR repeat
`XP_057778994.1`	Pfam	`PF01535`	PPR	Repeat	538	562	1.4e-71	232.5	PPR repeat
`XP_057778994.1`	Pfam	`PF01535`	PPR	Repeat	669	697	1.4e-71	232.5	PPR repeat
`XP_057778994.1`	Pfam	`PF01535`	PPR	Repeat	741	767	1.4e-71	232.5	PPR repeat
`XP_057778994.1`	Pfam	`PF13041`	PPR_2	Repeat	766	814	9.9e-82	269.6	PPR repeat family
`XP_057778994.1`	Pfam	`PF13812`	PPR_3	Repeat	767	813	2.4e-23	82.7	Pentatricopeptide repeat domain
`XP_057778994.1`	Pfam	`PF01535`	PPR	Repeat	769	796	1.4e-71	232.5	PPR repeat
`XP_057778994.1`	Pfam	`PF01535`	PPR	Repeat	804	832	1.4e-71	232.5	PPR repeat
`XP_057778994.1`	Pfam	`PF20431`	E_motif	Repeat	890	947	4.7e-17	62.7	E motif
`XP_057778994.1`	Pfam	`PF20430`	Eplus_motif	Motif	953	980	1.1e-07	32.2	E+ motif
`XP_057778994.1`	Pfam	`PF14432`	DYW_deaminase	Domain	984	1075	6.5e-38	129.2	DYW family of nucleic acid deaminases

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057923011.1
TTTCTGGTTTTGCCTTATTGCTGAAATCATAAAACTGATTTTACAACTACTCCGTTGATATTTTAAAATTCAGTCTTCGTTGCTCTGCTCCAACTACGGCGGCCGCGTCCAAGTATTAAAGACGAAAGCTCCGCCGCCCATTTTCTTAAGAAGACGGCGCGCTCGAAGGTTTCTCCGACGGAACAAAGGTGTTTTATCTATTGTTGGTGAATTGAATTCCATGCACCAACCCCATTTCGCACGAGCCGCTGCTCATCATC...

CDS

1 records

下载 CDS FASTA

lcl|NC_080394.1_cds_XP_057778994.1_44299
ATGTTTCCTCCGAAAAAAGTCGTATCGTCCTCGCGCCGGCTATTCTGCACCTGCATTTCGGCAGACGCCACTTATAGTTATCTCGCCAATGCCGCAGTTATACGCTCAAACTCAGCTCAAGCCCGCCCTTTGTTCACTTTCCTTGACGACCAAAAGCAAAAACAAGTCCCAGCCGAGAACCATGACCGAATGGCTGGAAATCCATTTGAAATACACGAATCTTCGATATCCCAAAAATACGAGCTTTTGATTGAGAAATA...

Protein

1 records

下载 Protein FASTA

XP_057778994.1
MFPPKKVVSSSRRLFCTCISADATYSYLANAAVIRSNSAQARPLFTFLDDQKQKQVPAENHDRMAGNPFEIHESSISQKYELLIEKYRFSRSDLEAKQFHSDVIKHGFVGDLFMGNTLINAYARSGDMWSAHDVFDEMPDRNSVTWSCLISGYTHSESFKEALAAFGRMVSAGFTPNHYALGSALRACQRLGSEGFKYGLQIHGLVSKTRYAFDVVVCNVLISMYGNCIVGSIGSDFAHCVFDGIANRNSVSWNSLISVY...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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