当前解析结果
SmilChr08G003092| 统一新 Gene ID | SmilChr08G003092 |
|---|---|
| 名称 | SmilChr08G003092 |
| 描述 | uncharacterized SmilChr08G003092 |
| 染色体 / SeqID | Chr08 / NC_080394.1 |
| 坐标与链方向 | 31129505 - 31132258 / + |
| NCBI Gene ID | LOC130997641 |
|---|---|
| GeneID | 130997641 |
| locus_tag | - |
| NCBI Name | LOC130997641 |
| 原始查询 | SmilChr08G003092 |
| 来源 | GFF basic annotation; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | alpha/beta-Hydrolases superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:820126]; symbol=AT3G09690; hit=AT3G09690; species=arabidopsis; confidence=high |
| 产物 | alpha/beta-Hydrolases superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:820126]; symbol=AT3G09690; hit=AT3G09690; species=arabidopsis; confidence=high |
| Arabidopsis | AT3G09690 (AT3G09690)alpha/beta-Hydrolases superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:820126] identity=56.9; qcov=0.969; evalue=0; confidence=high |
| Rice | Os03g0288300- identity=53.2; qcov=0.98; evalue=0; confidence=high |
| GO | - |
| KEGG | - |
| Pfam | PF00561 (Abhydrolase_1); PF12697 (Abhydrolase_6) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130997641 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Endoplasmic reticulum | 内质网 | 1.00000 | XP_057779017.1 |
| 2 | Endoplasmic reticulum membrane | 内质网膜 | 1.00000 | XP_057779017.1 |
| 3 | Nucleus membrane | 核膜 | 0.20000 | XP_057779017.1 |
| 4 | Golgi apparatus | 高尔基体 | 0.20000 | XP_057779017.1 |
| 5 | Nucleus | 细胞核 | 0.00000 | XP_057779017.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr8:31129878 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C55 |
Chr8:31130446 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B35 |
Chr8:31130459 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B12 |
Chr8:31130572 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C87 |
Chr8:31130728 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B35 |
Chr8:31130785 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | A8,B133,B35,B53 |
Chr8:31130791 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | A8,B133,B53,C87 |
Chr8:31131631 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | D10 |
Chr8:31131698 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B12 |
Chr8:31131910 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | B63,B8,C16,C51,C57 |
Chr8:31132008 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | A20,A25,B37 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057779017.1PF00561
Abhydrolase_1 178-465 aa
PF12697
Abhydrolase_6 193-465 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057779017.1 |
Pfam | PF00561 |
Abhydrolase_1 | Domain | 178 | 465 | 1.1e-18 | 68.6 | alpha/beta hydrolase fold |
XP_057779017.1 |
Pfam | PF12697 |
Abhydrolase_6 | Domain | 193 | 465 | 4.1e-12 | 47.9 | Alpha/beta hydrolase family |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。