当前解析结果
SmilChr08G003146| 统一新 Gene ID | SmilChr08G003146 |
|---|---|
| 名称 | SmilChr08G003146 |
| 描述 | uncharacterized protein At2g29880-like |
| 染色体 / SeqID | Chr08 / NC_080394.1 |
| 坐标与链方向 | 31866968 - 31867549 / + |
| NCBI Gene ID | LOC130998327 |
|---|---|
| GeneID | 130998327 |
| locus_tag | - |
| NCBI Name | LOC130998327 |
| 原始查询 | SmilChr08G003146 |
| 来源 | GFF basic annotation; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | Myb/SANT-like DNA-binding domain protein [Source:NCBI gene (formerly Entrezgene);Acc:832784]; symbol=AT5G27260; hit=AT5G27260; species=arabidopsis; confidence=low |
| 产物 | Myb/SANT-like DNA-binding domain protein [Source:NCBI gene (formerly Entrezgene);Acc:832784]; symbol=AT5G27260; hit=AT5G27260; species=arabidopsis; confidence=low |
| Arabidopsis | AT5G27260 (AT5G27260)Myb/SANT-like DNA-binding domain protein [Source:NCBI gene (formerly Entrezgene);Acc:832784] identity=30.11; qcov=0.907; evalue=1.47e-09; confidence=low |
| Rice | -- |
| GO | - |
| KEGG | - |
| Pfam | PF24769 (At2g29880_C) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130998327 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr8:31867007 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | A13,B123,B137,B94 |
Chr8:31867014 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B113,B56,C54 |
Chr8:31867040 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B109,B125,C21,C36 |
Chr8:31867046 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C40 |
Chr8:31867054 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B134 |
Chr8:31867121 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B26,C77 |
Chr8:31867172 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C16 |
Chr8:31867173 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B130,B54 |
Chr8:31867208 |
C |
T |
EMS_canonical_SNV | stop_gained | 20 | A10,A24,A6,B113,B120,B123,B14,B16,B34,B56,B76,B96,C11,C25,C45,C55,C69,C75,C8,C85 |
Chr8:31867224 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B13,C8 |
Chr8:31867241 |
C |
T |
EMS_canonical_SNV | stop_gained | 26 | A16,A9,B100,B101,B126,B23,B41,B51,B57,B60,B63,B8,B84,B91,B93,B94,B98,C1,C16,C24,C27,C49,C51,C57,C83,D1 |
Chr8:31867257 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B88 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057779738.1PF24769
At2g29880_C 145-190 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057779738.1 |
Pfam | PF24769 |
At2g29880_C | Domain | 145 | 190 | 2.4e-21 | 76.6 | At2g29880 C-terminal domain |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。