Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr08G003156`

染色体: Chr08 坐标: 32062811-32072524 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr08G003156`
名称	SmilChr08G003156
描述	ethylene-insensitive protein 2.1
染色体 / SeqID	Chr08 / NC_080394.1
坐标与链方向	32062811 - 32072524 / `-`

ID 对照

NCBI Gene ID	`LOC130997739`
GeneID	`130997739`
locus_tag	`-`
NCBI Name	`LOC130997739`
原始查询	`SmilChr08G003156`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	ethylene-insensitive protein 2.1
产物	ethylene-insensitive protein 2.1
Arabidopsis	`AT5G03280` (EIN2) NRAMP metal ion transporter family protein [Source:NCBI gene (formerly Entrezgene);Acc:831889] identity=48.5; qcov=1.02; evalue=0; confidence=high
Rice	`Os07g0155600` (EIN2) - identity=39.7; qcov=0.999; evalue=0; confidence=medium
GO	GO:0005384 (manganese ion transmembrane transporter activity); GO:0009873 (ethylene-activated signaling pathway); GO:0015086 (cadmium ion transmembrane transporter activity); GO:0016020 (membrane); GO:0030001 (metal ion transport)
KEGG	smil04016 (MAPK signaling pathway - plant - Salvia miltiorrhiza (redroot sage)); smil04075 (Plant hormone signal transduction - Salvia miltiorrhiza (redroot sage))
Pfam	PF01566 (Nramp)
InterPro	-
eggNOG	-
NR	GeneID:130997739

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Endoplasmic reticulum membrane	内质网膜	0.40000	`XP_057779130.1`
2	Endoplasmic reticulum	内质网	0.20000	`XP_057779130.1`
3	Golgi apparatus	高尔基体	0.20000	`XP_057779130.1`
4	Vacuole membrane	液泡膜	0.20000	`XP_057779130.1`
5	Nucleus	细胞核	0.00000	`XP_057779130.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr8:32065605`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	A16,B99
`Chr8:32066226`	`C`	`T`	EMS_canonical_SNV	stop_gained	1	B114
`Chr8:32066226`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B114
`Chr8:32066524`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D11
`Chr8:32066779`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B72
`Chr8:32066911`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C14
`Chr8:32066914`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	A13
`Chr8:32066989`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	A10,B56,B96,C45,C54
`Chr8:32067084`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C87
`Chr8:32067701`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B12
`Chr8:32067907`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C87
`Chr8:32068346`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	B107,B139,C3,C39,C5

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057779130.1

1288 aa

644

1288

Nramp

PF01566 Nramp 27-415 aa

XP_057779131.1

1288 aa

644

1288

Nramp

PF01566 Nramp 27-415 aa

XP_057779132.1

1288 aa

644

1288

Nramp

PF01566 Nramp 27-415 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057779130.1`	Pfam	`PF01566`	Nramp	Domain	27	415	5.7e-84	283.0	Natural resistance-associated macrophage protein-like
`XP_057779131.1`	Pfam	`PF01566`	Nramp	Domain	27	415	5.7e-84	283.0	Natural resistance-associated macrophage protein-like
`XP_057779132.1`	Pfam	`PF01566`	Nramp	Domain	27	415	5.7e-84	283.0	Natural resistance-associated macrophage protein-like

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

3 records

下载 cDNA FASTA

XM_057923149.1
ACAAACATGTACGCAAATAATTTGTAGTATAAAATAAATGTTCTCTTCCTTCTCTATCTACACTCTCCCAGCTCACACTCCTCTTTATCTCTATCTACATCTCTCTTTCTGTATCTATAGTTTGCTTCTCCTTTTCATTCAGTAAATATGCCAAAGACTCTGATCTAAACTCTGAGCACGTACGACCAAAGCGCGACGCGAAAAGGAACGGCAAAGTGCAGCACGACGAAGTTTCAGCATTTTATATCTAACTGGGCTGC...

XM_057923147.1
ACAAACATGTACGCAAATAATTTGTAGTATAAAATAAATGTTCTCTTCCTTCTCTATCTACACTCTCCCAGCTCACACTCCTCTTTATCTCTATCTACATCTCTCTTTCTGTATCTATAGTTTGCTTCTCCTTTTCATTCAGTAAATATGCCAAAGACTCTGATCTAAACTCTGAGCACGTACGACCAAAGCGCGACGCGAAAAGGAACGGCAAAGTGCAGCACGACGAAGTTTCAGCATTTTATATCTAACTGGGCTGC...

CDS

3 records

下载 CDS FASTA

LOC130997739
ATGGAATATGAGACGCTGGTAACTGATTATCAGCCAAGAACTAGAGGGCGGGTTCTTGCTGCTATTGGACCGGTGCTTTGGATTGCTATCAGCTATGTAGACCCTGGGAAATGGGCAGCATCTATAGAGGGTGGTGCTCGGATTGGTTTTGATTTGTCCTTACTGGTGCTTATTGTAAACTGTGCTGCTATTTTATGTCAGTACCTGTCCGCACGTGTAGCAATTGCCACTGGAAAGAATCTTGCACAGATTTGCAGCGA...

Protein

3 records

下载 Protein FASTA

XP_057779130.1
MEYETLVTDYQPRTRGRVLAAIGPVLWIAISYVDPGKWAASIEGGARIGFDLSLLVLIVNCAAILCQYLSARVAIATGKNLAQICSEEYNDLTCILLGIQAEISMIVLDLTMILGTAYGLNAVLGIDLFNCVFLTGFDAILFPFLASFLGNPRAKILSICLACFVLASYGSGVLVSQSESSFSTGGILNKLTGENVYTLMSIVGANIMPHNLYLHSSIVQGEGRIDIPKEALCYDHFFATLCIFSGIFLLNSMLVNLAAN...

XP_057779131.1
MEYETLVTDYQPRTRGRVLAAIGPVLWIAISYVDPGKWAASIEGGARIGFDLSLLVLIVNCAAILCQYLSARVAIATGKNLAQICSEEYNDLTCILLGIQAEISMIVLDLTMILGTAYGLNAVLGIDLFNCVFLTGFDAILFPFLASFLGNPRAKILSICLACFVLASYGSGVLVSQSESSFSTGGILNKLTGENVYTLMSIVGANIMPHNLYLHSSIVQGEGRIDIPKEALCYDHFFATLCIFSGIFLLNSMLVNLAAN...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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JBrowse

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