当前解析结果
SmilChr08G003163| 统一新 Gene ID | SmilChr08G003163 |
|---|---|
| 名称 | SmilChr08G003163 |
| 描述 | BTB/POZ domain-containing protein At5g03250 |
| 染色体 / SeqID | Chr08 / NC_080394.1 |
| 坐标与链方向 | 32225264 - 32228009 / - |
| NCBI Gene ID | LOC130997746 |
|---|---|
| GeneID | 130997746 |
| locus_tag | - |
| NCBI Name | LOC130997746 |
| 原始查询 | SmilChr08G003163 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | BTB/POZ domain-containing protein At5g03250 |
| 产物 | BTB/POZ domain-containing protein At5g03250 |
| Arabidopsis | AT5G03250 (AT5G03250)Phototropic-responsive NPH3 family protein [Source:NCBI gene (formerly Entrezgene);Acc:831894] identity=62.4; qcov=1.02; evalue=0; confidence=high |
| Rice | Os08g0130600 (P0582D05.131)- identity=55.6; qcov=0.975; evalue=0; confidence=high |
| GO | GO:0005515 (protein binding) |
| KEGG | - |
| Pfam | PF00651 (BTB); PF03000 (NPH3) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130997746 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytosol | 细胞质基质 | 0.80000 | XP_057779140.1 |
| 2 | Nucleus | 细胞核 | 0.60000 | XP_057779140.1 |
| 3 | Cytoplasm | 细胞质 | 0.20000 | XP_057779140.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057779140.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057779140.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr8:32225693 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | C19,C5 |
Chr8:32225720 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B129,B90 |
Chr8:32225758 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | A9,B64,C19,C5 |
Chr8:32225759 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C1 |
Chr8:32225788 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | A19,A24,C61 |
Chr8:32225832 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B39,C14 |
Chr8:32226088 |
AG |
A |
1bp_deletion | frameshift_variant | 39 | A10,A20,A23,B111,B112,B118,B128,B131,B137,B138,B15,B25,B36,B42,B44,B45,B5,B57,B59,B84,B91,B98,C14,C17,C26,C30,C35,C38,C40,C44,C46,C5,C7,C70,C71,C75,D3,D8,D9 |
Chr8:32226213 |
CCA |
C |
2bp_deletion | frameshift_variant | 7 | A5,B37,B62,B7,B82,C34,C77 |
Chr8:32226229 |
AG |
A |
1bp_deletion | frameshift_variant | 128 | A10,A11,A14,A15,A18,A19,A2,A20,A23,A24,A3,A5,A7,A9,B101,B102,B103,B108,B111,B114,B118,B123,B128,B129,B131,B135,B137,B138,B15,B17,B18,B19,B20,B25,B3,B36,B37,B38,B40,B41,B42,B43,B44,B45,B49,B5,B51,B55,B56,B57,B59,B6,B61,B62,B69,B7,B70,B71,B75,B77,B78,B79,B80,B81,B82,B84,B87,B89,B90,B91,B92,B94,B97,B98,B99,C10,C12,C14,C15,C16,C17,C19,C21,C23,C25,C26,C27,C28,C3,C30,C34,C35,C38,C40,C43,C44,C46,C47,C48,C5,C51,C53,C59,C6,C60,C61,C62,C7,C70,C71,C72,C73,C74,C75,C77,C81,C83,C84,C86,C9,D10,D2,D3,D4,D5,D6,D8,D9 |
Chr8:32226234 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | B102,B118,B41,B61,C72 |
Chr8:32226305 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | B129,B90,B92,C21,D10 |
Chr8:32226346 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | A19,A24,C61 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057779140.1PF00651
BTB 24-114 aa
PF03000
NPH3 212-475 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057779140.1 |
Pfam | PF00651 |
BTB | Domain | 24 | 114 | 3.9e-08 | 34.2 | BTB/POZ domain |
XP_057779140.1 |
Pfam | PF03000 |
NPH3 | Family | 212 | 475 | 1.3e-93 | 314.1 | NPH3 family |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。