当前解析结果
SmilChr08G003171| 统一新 Gene ID | SmilChr08G003171 |
|---|---|
| 名称 | SmilChr08G003171 |
| 描述 | uncharacterized SmilChr08G003171 |
| 染色体 / SeqID | Chr08 / NC_080394.1 |
| 坐标与链方向 | 32377279 - 32379449 / - |
| NCBI Gene ID | LOC130998339 |
|---|---|
| GeneID | 130998339 |
| locus_tag | - |
| NCBI Name | LOC130998339 |
| 原始查询 | SmilChr08G003171 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | MuDR family transposase [Source:NCBI gene (formerly Entrezgene);Acc:3768859]; symbol=MUG7; hit=AT3G05850; species=arabidopsis; confidence=low |
| 产物 | MuDR family transposase [Source:NCBI gene (formerly Entrezgene);Acc:3768859]; symbol=MUG7; hit=AT3G05850; species=arabidopsis; confidence=low |
| Arabidopsis | AT3G05850 (MUG7)MuDR family transposase [Source:NCBI gene (formerly Entrezgene);Acc:3768859] identity=25.9; qcov=0.858; evalue=2.69e-56; confidence=low |
| Rice | Os12g0597300- identity=26.6; qcov=0.811; evalue=1.24e-53; confidence=low |
| GO | GO:0008270 (zinc ion binding) |
| KEGG | - |
| Pfam | PF00872 (Transposase_mut); PF04434 (SWIM); PF10551 (MULE) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130998339 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 1.00000 | XP_057779748.1 |
| 2 | Cytoplasm | 细胞质 | 0.20000 | XP_057779748.1 |
| 3 | Chromosome | 染色体 | 0.00000 | XP_057779748.1 |
| 4 | Centromere | 着丝粒 | 0.00000 | XP_057779748.1 |
| 5 | Chromatin | 染色质 | 0.00000 | XP_057779748.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr8:32377322 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | A3,B13,C15 |
Chr8:32377362 |
G |
A |
EMS_canonical_SNV | stop_gained | 3 | B58,B97,C87 |
Chr8:32377362 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B58,B97,C87 |
Chr8:32377370 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C15 |
Chr8:32377371 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C15 |
Chr8:32377399 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B2 |
Chr8:32377463 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B104 |
Chr8:32377464 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B16,C8 |
Chr8:32377864 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B31 |
Chr8:32377968 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | A25,B80,C1 |
Chr8:32377995 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | A1,B78 |
Chr8:32378042 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B114,B52 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057779748.1PF00872
Transposase_mut 273-373 aa
PF10551
MULE 274-368 aa
PF04434
SWIM 517-547 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057779748.1 |
Pfam | PF00872 |
Transposase_mut | Family | 273 | 373 | 1.4e-11 | 44.6 | Transposase, Mutator family |
XP_057779748.1 |
Pfam | PF10551 |
MULE | Domain | 274 | 368 | 2.1e-20 | 73.6 | MULE transposase domain |
XP_057779748.1 |
Pfam | PF04434 |
SWIM | Domain | 517 | 547 | 2.8e-07 | 30.6 | SWIM zinc finger |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。