当前解析结果
SmilChr08G003173| 统一新 Gene ID | SmilChr08G003173 |
|---|---|
| 名称 | SmilChr08G003173 |
| 描述 | uncharacterized SmilChr08G003173 |
| 染色体 / SeqID | Chr08 / NC_080394.1 |
| 坐标与链方向 | 32409560 - 32410863 / - |
| NCBI Gene ID | LOC130998341 |
|---|---|
| GeneID | 130998341 |
| locus_tag | - |
| NCBI Name | LOC130998341 |
| 原始查询 | SmilChr08G003173 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | hit=Os09g0268600; species=rice; confidence=low |
| 产物 | hit=Os09g0268600; species=rice; confidence=low |
| Arabidopsis | AT3G05850 (MUG7)MuDR family transposase [Source:NCBI gene (formerly Entrezgene);Acc:3768859] identity=26.5; qcov=0.765; evalue=1.96e-17; confidence=low |
| Rice | Os09g0268600- identity=26.1; qcov=0.842; evalue=2.82e-27; confidence=low |
| GO | GO:0008270 (zinc ion binding) |
| KEGG | - |
| Pfam | PF00872 (Transposase_mut); PF04434 (SWIM); PF10551 (MULE) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130998341 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 1.00000 | XP_057779750.1 |
| 2 | Cytoplasm | 细胞质 | 0.20000 | XP_057779750.1 |
| 3 | Chromosome | 染色体 | 0.00000 | XP_057779750.1 |
| 4 | Centromere | 着丝粒 | 0.00000 | XP_057779750.1 |
| 5 | Chromatin | 染色质 | 0.00000 | XP_057779750.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr8:32409600 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B107,B13,C8,D9 |
Chr8:32409641 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B107,D9 |
Chr8:32409715 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | D4 |
Chr8:32409741 |
GT |
G |
1bp_deletion | frameshift_variant | 123 | A1,A10,A15,A18,A19,A2,A20,A22,A25,A5,A8,A9,B10,B104,B106,B107,B108,B109,B11,B110,B114,B117,B119,B12,B123,B125,B127,B128,B132,B133,B136,B138,B14,B140,B15,B16,B19,B23,B24,B25,B26,B32,B39,B4,B41,B47,B48,B51,B53,B54,B55,B56,B58,B6,B61,B62,B64,B65,B68,B70,B71,B72,B73,B75,B77,B78,B82,B84,B85,B87,B96,B98,B99,C11,C12,C13,C17,C18,C19,C21,C22,C24,C26,C28,C29,C30,C31,C36,C38,C39,C40,C41,C42,C45,C48,C49,C50,C51,C54,C58,C63,C64,C65,C66,C67,C69,C7,C70,C71,C74,C76,C78,C80,C82,C83,C84,C87,C9,D10,D3,D4,D5,D9 |
Chr8:32409889 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B111,C60 |
Chr8:32409900 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | B132,B86,C41,C6,C87 |
Chr8:32409956 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B104,C18,C53 |
Chr8:32409961 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B10 |
Chr8:32409968 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | A4,B10,C5 |
Chr8:32409989 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C30 |
Chr8:32410061 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B59,C39,C69 |
Chr8:32410081 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B14,B76 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057779750.1PF10551
MULE 38-83 aa
PF00872
Transposase_mut 51-86 aa
PF04434
SWIM 233-262 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057779750.1 |
Pfam | PF10551 |
MULE | Domain | 38 | 83 | 1.9e-08 | 35.2 | MULE transposase domain |
XP_057779750.1 |
Pfam | PF00872 |
Transposase_mut | Family | 51 | 86 | 0.00011 | 21.9 | Transposase, Mutator family |
XP_057779750.1 |
Pfam | PF04434 |
SWIM | Domain | 233 | 262 | 5.4e-09 | 36.1 | SWIM zinc finger |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。