Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr08G003175`

染色体: Chr08 坐标: 32487196-32493539 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr08G003175`
名称	SmilChr08G003175
描述	origin of replication complex subunit 2-like
染色体 / SeqID	Chr08 / NC_080394.1
坐标与链方向	32487196 - 32493539 / `-`

ID 对照

NCBI Gene ID	`LOC130997754`
GeneID	`130997754`
locus_tag	`-`
NCBI Name	`LOC130997754`
原始查询	`SmilChr08G003175`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	origin of replication complex subunit 2-like
产物	origin of replication complex subunit 2-like
Arabidopsis	`AT2G37560` (ORC2) origin recognition complex second largest subunit 2 [Source:NCBI gene (formerly Entrezgene);Acc:818332] identity=67; qcov=0.975; evalue=1.75e-176; confidence=high
Rice	`Os03g0184700` (OsORC2) - identity=63; qcov=0.994; evalue=8.94e-172; confidence=high
GO	GO:0003688 (DNA replication origin binding); GO:0005634 (nucleus); GO:0005664 (nuclear origin of replication recognition complex); GO:0006260 (DNA replication)
KEGG	-
Pfam	PF04084 (RecA-like_ORC2); PF24882 (WHD_ORC2)
InterPro	-
eggNOG	-
NR	GeneID:130997754

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057779147.1`
2	Nucleoplasm	核质	1.00000	`XP_057779147.1`
3	Chromosome	染色体	0.40000	`XP_057779147.1`
4	Cytoplasm	细胞质	0.40000	`XP_057779147.1`
5	Centromere	着丝粒	0.00000	`XP_057779147.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr8:32487475`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	D10,D11
`Chr8:32487536`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D10
`Chr8:32487559`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B12
`Chr8:32487601`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C34
`Chr8:32487902`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B16
`Chr8:32487916`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B12
`Chr8:32489872`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B100,B26,C83
`Chr8:32490173`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	C32,C43,C61,C68

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057779147.1

361 aa

180

361

RecA-like_ORC2

WHD_ORC2

PF04084 RecA-like_ORC2 59-237 aa PF24882 WHD_ORC2 291-350 aa

XP_057779148.1

361 aa

180

361

RecA-like_ORC2

WHD_ORC2

PF04084 RecA-like_ORC2 59-237 aa PF24882 WHD_ORC2 291-350 aa

XP_057779149.1

361 aa

180

361

RecA-like_ORC2

WHD_ORC2

PF04084 RecA-like_ORC2 59-237 aa PF24882 WHD_ORC2 291-350 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057779147.1`	Pfam	`PF04084`	RecA-like_ORC2	Domain	59	237	4.7e-51	173.6	Origin recognition complex subunit 2 RecA-like domain
`XP_057779147.1`	Pfam	`PF24882`	WHD_ORC2	Domain	291	350	2.6e-22	78.9	ORC2 WHD
`XP_057779148.1`	Pfam	`PF04084`	RecA-like_ORC2	Domain	59	237	4.7e-51	173.6	Origin recognition complex subunit 2 RecA-like domain
`XP_057779148.1`	Pfam	`PF24882`	WHD_ORC2	Domain	291	350	2.6e-22	78.9	ORC2 WHD
`XP_057779149.1`	Pfam	`PF04084`	RecA-like_ORC2	Domain	59	237	4.7e-51	173.6	Origin recognition complex subunit 2 RecA-like domain
`XP_057779149.1`	Pfam	`PF24882`	WHD_ORC2	Domain	291	350	2.6e-22	78.9	ORC2 WHD

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

3 records

下载 cDNA FASTA

XM_057923165.1
TTCGCCTTTTTTCTTTTTTGTGTCCTACATCTCTCCATTTTTCTCCTCTCTGCCTCCCGTCTCCCCGCCCCGCCCCGCCTTCTTCAGCCTCGGCCCCTCCGTCCCCGGACTCCGCAGTAGCAGAAGTTTCCGACGCTAAGTTTCTGGTATTGCAGTATGGAGCCAAATGACCCCGAGGAAGAGGAGTTCGGGTTCTCAAGAAACTACTTTTTAGCAAAAGAATTGTGCAGTTCTGGCAAGAAATCAGCGCGCAAAGTTTC...

XM_057923164.1
AATTATAAATAAACAAGTAAATATTATTAGATGTCAGACACATGCCACAAAATATATTCTATAGGCGACACATAAGCTAGTCAAGTTACATAACACTTATTAGTTATTAACACATGTCACTTTAAATAAAAGAAATATTAAATATCATTAGAATTAAGTTTTAAAGCTTAACTTTAATTCTAACAAAATTGAATTAGAATCCTATTCGGCTATTCCTTCCCTAACCCTACAGACTTCAATTTGAATTCTCGACAACAGCT...

CDS

3 records

下载 CDS FASTA

LOC130997754
ATGGAGCCAAATGACCCCGAGGAAGAGGAGTTCGGGTTCTCAAGAAACTACTTTTTAGCAAAAGAATTGTGCAGTTCTGGCAAGAAATCAGCGCGCAAAGTTTCTGATATCAATCTCGTAGACGAGCAGGAATTAAGAGAAGCATATGCTAAACTTGAGTTCAAGCACGAGAAAGAGATCAATGCTCTGGTAGAAAGTTACAAGAAGTTGTATACTGAATGGGTTTTTATGTTAAGGTGTGGATTTGGGCTTCTGATGTA...

Protein

3 records

下载 Protein FASTA

XP_057779147.1
MEPNDPEEEEFGFSRNYFLAKELCSSGKKSARKVSDINLVDEQELREAYAKLEFKHEKEINALVESYKKLYTEWVFMLRCGFGLLMYGFGSKKGLIEDFASTALTDYSVVVINGYLQSINLKQVTVTLAELLWERLKTQRKLENHLKDQQPFHTQSMDDLISFLDGPHLEDGESFICVVVNNIDGPCLRDSESQQFLARLAACSHILMVASIDHVNAPLLWNKKMVHTEFNWYWYHVPTYAPYKVEGIFFPPILAHSGST...

XP_057779148.1
MEPNDPEEEEFGFSRNYFLAKELCSSGKKSARKVSDINLVDEQELREAYAKLEFKHEKEINALVESYKKLYTEWVFMLRCGFGLLMYGFGSKKGLIEDFASTALTDYSVVVINGYLQSINLKQVTVTLAELLWERLKTQRKLENHLKDQQPFHTQSMDDLISFLDGPHLEDGESFICVVVNNIDGPCLRDSESQQFLARLAACSHILMVASIDHVNAPLLWNKKMVHTEFNWYWYHVPTYAPYKVEGIFFPPILAHSGST...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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