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中文 EN

Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。
示例

当前解析结果

SmilChr08G003176

染色体: Chr08 坐标: 32503880-32506039 链方向: + 类型: protein_coding

基本信息

统一新 Gene IDSmilChr08G003176
名称SmilChr08G003176
描述pentatricopeptide repeat-containing protein At2g32630-like
染色体 / SeqIDChr08 / NC_080394.1
坐标与链方向32503880 - 32506039 / +

ID 对照

NCBI Gene IDLOC130997755
GeneID130997755
locus_tag-
NCBI NameLOC130997755
原始查询SmilChr08G003176

查看完整 ID 对照表

功能注释

来源GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述pentatricopeptide repeat-containing protein At2g32630-like
产物pentatricopeptide repeat-containing protein At2g32630-like
ArabidopsisAT2G32630 (AT2G32630)
Pentatricopeptide repeat (PPR-like) superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:817823]
identity=48.3; qcov=0.977; evalue=0; confidence=high
RiceOs07g0671200 (P0470D12.117)
-
identity=43.4; qcov=0.82; evalue=1.02e-143; confidence=medium
GOGO:0005515 (protein binding)
KEGG-
PfamPF01535 (PPR); PF12854 (PPR_1); PF13041 (PPR_2); PF13812 (PPR_3); PF17177 (PPR_long); PF23276 (TPR_24)
InterPro-
eggNOG-
NRGeneID:130997755

打开注释模块

亚细胞定位 Top 5

Rank定位位置中文ScoreProtein ID
1 Mitochondrion 线粒体 1.00000 XP_057779150.1
2 Nucleus 细胞核 0.00000 XP_057779150.1
3 Chromosome 染色体 0.00000 XP_057779150.1
4 Centromere 着丝粒 0.00000 XP_057779150.1
5 Chromatin 染色质 0.00000 XP_057779150.1

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置 REF ALT 类型 影响 携带材料数 材料
Chr8:32504567 G A EMS_canonical_SNV CDS_variant 3 B102,B97,C73
Chr8:32504689 C T EMS_canonical_SNV CDS_variant 3 B102,B97,C73
Chr8:32504962 G A EMS_canonical_SNV CDS_variant 4 B121,B123,B79,C50
Chr8:32505332 G A EMS_canonical_SNV CDS_variant 2 C16,C3
Chr8:32505536 G A EMS_canonical_SNV CDS_variant 1 B84
Chr8:32505550 C T EMS_canonical_SNV CDS_variant 2 A6,B34
Chr8:32505820 C T EMS_canonical_SNV CDS_variant 1 B76
Chr8:32505825 TAA T 2bp_deletion frameshift_variant 1 C83
Chr8:32505825 TAA T 2bp_deletion CDS_variant 1 C83
Chr8:32505876 G A EMS_canonical_SNV CDS_variant 2 B15,C15

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057779150.1
612 aa
N
1
306
612
PPR
PPR_2
PPR
PPR_3
TPR_24
PPR
PPR_2
PPR_long
PPR
TPR_24
PPR_3
PPR_1
PPR_2
PPR
PPR_1
PPR
PPR_3
PPR_1
PPR_2
PPR
PPR_1
PPR
PPR_long
PPR_1
PPR_3
PPR_2
PPR
PPR_1
PPR_2
PPR
TPR_24
PPR_long
PPR_3
PPR_1
PPR
PPR_2
PPR_3
PPR_1
PPR_2
PPR
C
PF01535 PPR 150-176 aa PF13041 PPR_2 215-262 aa PF01535 PPR 217-246 aa PF13812 PPR_3 236-289 aa PF23276 TPR_24 241-344 aa PF01535 PPR 251-281 aa PF13041 PPR_2 252-292 aa PF17177 PPR_long 299-404 aa PF01535 PPR 301-316 aa PF23276 TPR_24 304-385 aa PF13812 PPR_3 306-363 aa PF12854 PPR_1 314-345 aa PF13041 PPR_2 319-367 aa PF01535 PPR 322-351 aa PF12854 PPR_1 349-382 aa PF01535 PPR 357-386 aa PF13812 PPR_3 377-431 aa PF12854 PPR_1 384-414 aa PF13041 PPR_2 389-437 aa PF01535 PPR 391-421 aa PF12854 PPR_1 419-448 aa PF01535 PPR 427-451 aa PF17177 PPR_long 449-534 aa PF12854 PPR_1 451-484 aa PF13812 PPR_3 452-502 aa PF13041 PPR_2 455-496 aa PF01535 PPR 458-487 aa PF12854 PPR_1 487-519 aa PF13041 PPR_2 490-538 aa PF01535 PPR 493-523 aa PF23276 TPR_24 494-587 aa PF17177 PPR_long 509-603 aa PF13812 PPR_3 515-565 aa PF12854 PPR_1 521-554 aa PF01535 PPR 528-558 aa PF13041 PPR_2 532-574 aa PF13812 PPR_3 548-605 aa PF12854 PPR_1 556-588 aa PF13041 PPR_2 560-606 aa PF01535 PPR 563-593 aa
Protein ID 来源 结构域编号 结构域名称 类型 起始 aa 终止 aa E-value Score 说明
XP_057779150.1 Pfam PF01535 PPR Repeat 150 176 8.5e-88 283.4 PPR repeat
XP_057779150.1 Pfam PF13041 PPR_2 Repeat 215 262 3.3e-118 386.4 PPR repeat family
XP_057779150.1 Pfam PF01535 PPR Repeat 217 246 8.5e-88 283.4 PPR repeat
XP_057779150.1 Pfam PF13812 PPR_3 Repeat 236 289 1.3e-64 214.9 Pentatricopeptide repeat domain
XP_057779150.1 Pfam PF23276 TPR_24 Repeat 241 344 2.2e-33 115.7 Pentatricopeptide repeat-containing protein
XP_057779150.1 Pfam PF01535 PPR Repeat 251 281 8.5e-88 283.4 PPR repeat
XP_057779150.1 Pfam PF13041 PPR_2 Repeat 252 292 3.3e-118 386.4 PPR repeat family
XP_057779150.1 Pfam PF17177 PPR_long Repeat 299 404 3.8e-36 125.2 Pentacotripeptide-repeat region of PRORP
XP_057779150.1 Pfam PF01535 PPR Repeat 301 316 8.5e-88 283.4 PPR repeat
XP_057779150.1 Pfam PF23276 TPR_24 Repeat 304 385 2.2e-33 115.7 Pentatricopeptide repeat-containing protein
XP_057779150.1 Pfam PF13812 PPR_3 Repeat 306 363 1.3e-64 214.9 Pentatricopeptide repeat domain
XP_057779150.1 Pfam PF12854 PPR_1 Repeat 314 345 6.1e-98 320.9 PPR repeat
XP_057779150.1 Pfam PF13041 PPR_2 Repeat 319 367 3.3e-118 386.4 PPR repeat family
XP_057779150.1 Pfam PF01535 PPR Repeat 322 351 8.5e-88 283.4 PPR repeat
XP_057779150.1 Pfam PF12854 PPR_1 Repeat 349 382 6.1e-98 320.9 PPR repeat
XP_057779150.1 Pfam PF01535 PPR Repeat 357 386 8.5e-88 283.4 PPR repeat
XP_057779150.1 Pfam PF13812 PPR_3 Repeat 377 431 1.3e-64 214.9 Pentatricopeptide repeat domain
XP_057779150.1 Pfam PF12854 PPR_1 Repeat 384 414 6.1e-98 320.9 PPR repeat
XP_057779150.1 Pfam PF13041 PPR_2 Repeat 389 437 3.3e-118 386.4 PPR repeat family
XP_057779150.1 Pfam PF01535 PPR Repeat 391 421 8.5e-88 283.4 PPR repeat
XP_057779150.1 Pfam PF12854 PPR_1 Repeat 419 448 6.1e-98 320.9 PPR repeat
XP_057779150.1 Pfam PF01535 PPR Repeat 427 451 8.5e-88 283.4 PPR repeat
XP_057779150.1 Pfam PF17177 PPR_long Repeat 449 534 3.8e-36 125.2 Pentacotripeptide-repeat region of PRORP
XP_057779150.1 Pfam PF12854 PPR_1 Repeat 451 484 6.1e-98 320.9 PPR repeat
XP_057779150.1 Pfam PF13812 PPR_3 Repeat 452 502 1.3e-64 214.9 Pentatricopeptide repeat domain
XP_057779150.1 Pfam PF13041 PPR_2 Repeat 455 496 3.3e-118 386.4 PPR repeat family
XP_057779150.1 Pfam PF01535 PPR Repeat 458 487 8.5e-88 283.4 PPR repeat
XP_057779150.1 Pfam PF12854 PPR_1 Repeat 487 519 6.1e-98 320.9 PPR repeat
XP_057779150.1 Pfam PF13041 PPR_2 Repeat 490 538 3.3e-118 386.4 PPR repeat family
XP_057779150.1 Pfam PF01535 PPR Repeat 493 523 8.5e-88 283.4 PPR repeat
XP_057779150.1 Pfam PF23276 TPR_24 Repeat 494 587 2.2e-33 115.7 Pentatricopeptide repeat-containing protein
XP_057779150.1 Pfam PF17177 PPR_long Repeat 509 603 3.8e-36 125.2 Pentacotripeptide-repeat region of PRORP
XP_057779150.1 Pfam PF13812 PPR_3 Repeat 515 565 1.3e-64 214.9 Pentatricopeptide repeat domain
XP_057779150.1 Pfam PF12854 PPR_1 Repeat 521 554 6.1e-98 320.9 PPR repeat
XP_057779150.1 Pfam PF01535 PPR Repeat 528 558 8.5e-88 283.4 PPR repeat
XP_057779150.1 Pfam PF13041 PPR_2 Repeat 532 574 3.3e-118 386.4 PPR repeat family
XP_057779150.1 Pfam PF13812 PPR_3 Repeat 548 605 1.3e-64 214.9 Pentatricopeptide repeat domain
XP_057779150.1 Pfam PF12854 PPR_1 Repeat 556 588 6.1e-98 320.9 PPR repeat
XP_057779150.1 Pfam PF13041 PPR_2 Repeat 560 606 3.3e-118 386.4 PPR repeat family
XP_057779150.1 Pfam PF01535 PPR Repeat 563 593 8.5e-88 283.4 PPR repeat

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA
XM_057923167.1
CACCGAGCTTATTTATACTCAAGAAAATCATCCGCACACTGCACTGATAAAAATAAGAACTTAAACACTCCATTTTTGAAGGAGAAACTTGCGGAGCTATACAAGAATAGTAGAAGTATTCACCGAAAGTGGATTGAATTCAAGTTCCGCTGCAGACTGTGGAACATTCATTCGCACAATTCCATGTCCAAGCAAGGATTCTACCAGACCGCAAAACAAGTTTTCACCTCAGTATCTACTTCAAAATCCAATCAACACAC...

CDS

1 records

下载 CDS FASTA
LOC130997755
ATGTCCAAGCAAGGATTCTACCAGACCGCAAAACAAGTTTTCACCTCAGTATCTACTTCAAAATCCAATCAACACACCGCTAATTTGATTGCCAAATCCCTCATCAATTCGACCCCAAAATCTCTCAAAATTTCACAATCTCTCATTTCCAAACTGAACCCGCATATCACACACCATGTTCTCTCGAACCCACGAATTCCTAGCTCTTGTTGCCTGCGTTTCTTCAAGTTTCTGCGGACGAATCAGTCTATCACTCCTCC...

Protein

1 records

下载 Protein FASTA
XP_057779150.1
MSKQGFYQTAKQVFTSVSTSKSNQHTANLIAKSLINSTPKSLKISQSLISKLNPHITHHVLSNPRIPSSCCLRFFKFLRTNQSITPPKPDLESHIIIILRLFGARKFAEAKNILSAAVVDEYLRCPFSELASLVSKSCVEPGVKIKLFDMLFRVYADNSKFDEGLEVFEYMVNSGFEIDKRSCMVYLVALKKCNRFGSLYDFFQKMVECNVMITVYSMTLVIDGLCKRKEVEKARKLMHDLVRRGVKPSAYTFNTFIDAY...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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