当前解析结果
SmilChr08G003188| 统一新 Gene ID | SmilChr08G003188 |
|---|---|
| 名称 | SmilChr08G003188 |
| 描述 | helicase protein MOM1-like |
| 染色体 / SeqID | Chr08 / NC_080394.1 |
| 坐标与链方向 | 32625505 - 32631881 / - |
| NCBI Gene ID | LOC130998344 |
|---|---|
| GeneID | 130998344 |
| locus_tag | - |
| NCBI Name | LOC130998344 |
| 原始查询 | SmilChr08G003188 |
| 来源 | GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | helicase protein MOM1-like |
| 产物 | helicase protein MOM1-like |
| Arabidopsis | AT1G08060 (MOM)ATP-dependent helicase family protein [Source:NCBI gene (formerly Entrezgene);Acc:837322] identity=36.2; qcov=0.565; evalue=1.19e-70; confidence=medium |
| Rice | Os06g0102800- identity=36.4; qcov=0.626; evalue=1.47e-93; confidence=medium |
| GO | GO:0000122 (negative regulation of transcription by RNA polymerase II); GO:0000785 (chromatin); GO:0003677 (DNA binding); GO:0003682 (chromatin binding); GO:0005634 (nucleus); GO:0006338 (chromatin remodeling); GO:0016887 (ATP hydrolysis activity); GO:0042393 (histone binding); GO:0140658 (ATP-dependent chromatin remodeler activity) |
| KEGG | smil03082 (ATP-dependent chromatin remodeling - Salvia miltiorrhiza (redroot sage)) |
| Pfam | PF00271 (Helicase_C) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130998344 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 1.00000 | XP_057779752.1 |
| 2 | Chromosome | 染色体 | 0.20000 | XP_057779752.1 |
| 3 | Centromere | 着丝粒 | 0.00000 | XP_057779752.1 |
| 4 | Chromatin | 染色质 | 0.00000 | XP_057779752.1 |
| 5 | Telomere | 端粒 | 0.00000 | XP_057779752.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr8:32625866 |
G |
GA |
1bp_insertion | frameshift_variant | 46 | A10,A18,A19,A24,A9,B100,B106,B111,B124,B129,B13,B19,B2,B25,B26,B32,B5,B52,B65,B71,B75,B83,B85,B91,B98,C1,C11,C16,C26,C27,C29,C31,C35,C37,C39,C46,C48,C56,C59,C61,C63,C67,C69,C72,C74,C81 |
Chr8:32625895 |
CA |
C |
1bp_deletion | frameshift_variant | 42 | A19,A24,A9,B100,B106,B111,B124,B129,B13,B19,B2,B25,B26,B32,B33,B52,B65,B71,B75,B83,B85,B91,B98,C11,C16,C21,C27,C29,C31,C35,C37,C39,C4,C46,C48,C54,C56,C60,C63,C67,C69,C74 |
Chr8:32625907 |
T |
TC |
1bp_insertion | frameshift_variant | 43 | A19,A24,A9,B100,B106,B11,B111,B124,B129,B13,B19,B2,B25,B26,B32,B33,B52,B71,B75,B83,B85,B91,B98,C11,C16,C21,C27,C29,C31,C35,C37,C39,C4,C46,C48,C54,C56,C60,C63,C67,C69,C74,D5 |
Chr8:32625934 |
TG |
T |
1bp_deletion | frameshift_variant | 6 | A18,B5,C59,C61,C72,C81 |
Chr8:32625937 |
CG |
C |
1bp_deletion | frameshift_variant | 6 | A18,B5,C59,C61,C72,C81 |
Chr8:32625973 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C22 |
Chr8:32626036 |
AT |
A |
1bp_deletion | frameshift_variant | 60 | A19,A20,A24,A3,A4,A9,B100,B103,B104,B106,B11,B111,B120,B125,B129,B17,B19,B20,B25,B26,B28,B30,B32,B33,B35,B52,B54,B6,B63,B71,B73,B74,B80,B85,B86,B87,B9,B95,C1,C11,C16,C26,C27,C29,C35,C39,C4,C46,C48,C53,C54,C56,C60,C61,C63,C67,C74,C8,C80,D5 |
Chr8:32626176 |
G |
A |
EMS_canonical_SNV | stop_gained | 1 | B6 |
Chr8:32626176 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B6 |
Chr8:32626603 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B102,C73 |
Chr8:32626606 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C26 |
Chr8:32627061 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B35,C39,C4,D11 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057779752.1PF00271
Helicase_C 269-374 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057779752.1 |
Pfam | PF00271 |
Helicase_C | Domain | 269 | 374 | 3.5e-09 | 37.6 | Helicase conserved C-terminal domain |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。