当前解析结果
SmilChr08G003220| 统一新 Gene ID | SmilChr08G003220 |
|---|---|
| 名称 | SmilChr08G003220 |
| 描述 | uncharacterized SmilChr08G003220 |
| 染色体 / SeqID | Chr08 / NC_080394.1 |
| 坐标与链方向 | 33070434 - 33071558 / - |
| NCBI Gene ID | LOC130998349 |
|---|---|
| GeneID | 130998349 |
| locus_tag | - |
| NCBI Name | LOC130998349 |
| 原始查询 | SmilChr08G003220 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | hit=Os08g0202300; species=rice; confidence=low |
| 产物 | hit=Os08g0202300; species=rice; confidence=low |
| Arabidopsis | AT5G51080 (AT5G51080)RNase H family protein [Source:NCBI gene (formerly Entrezgene);Acc:835181] identity=28.6; qcov=0.243; evalue=1.39e-06; confidence=weak |
| Rice | Os08g0202300- identity=28.1; qcov=0.305; evalue=1.65e-08; confidence=low |
| GO | GO:0003676 (nucleic acid binding); GO:0004523 (RNA-DNA hybrid ribonuclease activity) |
| KEGG | - |
| Pfam | PF00075 (RNase_H); PF13456 (RVT_3); PF17917 (RT_RNaseH); PF17919 (RT_RNaseH_2) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130998349 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytoplasm | 细胞质 | 1.00000 | XP_057779757.1 |
| 2 | Nucleus | 细胞核 | 0.20000 | XP_057779757.1 |
| 3 | Cytosol | 细胞质基质 | 0.20000 | XP_057779757.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057779757.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057779757.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr8:33070506 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B68 |
Chr8:33070638 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | A5 |
Chr8:33070644 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B38,C53 |
Chr8:33070654 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B65 |
Chr8:33070679 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | B65,B82,B9,B96,C43 |
Chr8:33070691 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B25,B38 |
Chr8:33070704 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B75,C9 |
Chr8:33070707 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B75,C87 |
Chr8:33070721 |
G |
A |
EMS_canonical_SNV | stop_gained | 1 | B94 |
Chr8:33070721 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B94 |
Chr8:33070724 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C82 |
Chr8:33070736 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B25,B38,C13,C53 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057779757.1PF17919
RT_RNaseH_2 15-113 aa
PF17917
RT_RNaseH 43-142 aa
PF00075
RNase_H 174-286 aa
PF13456
RVT_3 178-296 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057779757.1 |
Pfam | PF17919 |
RT_RNaseH_2 | Domain | 15 | 113 | 4.7e-20 | 72.2 | RNase H-like domain found in reverse transcriptase |
XP_057779757.1 |
Pfam | PF17917 |
RT_RNaseH | Domain | 43 | 142 | 1.3e-15 | 58.1 | RNase H-like domain found in reverse transcriptase |
XP_057779757.1 |
Pfam | PF00075 |
RNase_H | Domain | 174 | 286 | 8.5e-06 | 26.7 | RNase H |
XP_057779757.1 |
Pfam | PF13456 |
RVT_3 | Domain | 178 | 296 | 3e-14 | 53.7 | Reverse transcriptase-like |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。