Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr08G003244`

染色体: Chr08 坐标: 33326580-33329095 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr08G003244`
名称	SmilChr08G003244
描述	S-adenosylmethionine synthase 3-like
染色体 / SeqID	Chr08 / NC_080394.1
坐标与链方向	33326580 - 33329095 / `+`

ID 对照

NCBI Gene ID	`LOC130997816`
GeneID	`130997816`
locus_tag	`-`
NCBI Name	`LOC130997816`
原始查询	`SmilChr08G003244`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	S-adenosylmethionine synthase 3-like
产物	S-adenosylmethionine synthase 3-like
Arabidopsis	`AT2G36880` (MAT3) methionine adenosyltransferase 3 [Source:NCBI gene (formerly Entrezgene);Acc:818260] identity=93.3; qcov=1; evalue=0; confidence=high
Rice	`Os05g0135700` (OsSAMS1) - identity=89.9; qcov=0.992; evalue=0; confidence=high
GO	GO:0004478 (methionine adenosyltransferase activity); GO:0005524 (ATP binding); GO:0005829 (cytosol); GO:0006556 (S-adenosylmethionine biosynthetic process)
KEGG	smil00270 (Cysteine and methionine metabolism - Salvia miltiorrhiza (redroot sage)); smil00670 (One carbon pool by folate - Salvia miltiorrhiza (redroot sage)); smil00999 (Biosynthesis of various plant secondary metabolites - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage)); smil01110 (Biosynthesis of secondary metabolites - Salvia miltiorrhiza (redroot sage)); smil01230 (Biosynthesis of amino acids - Salvia miltiorrhiza (redroot sage)); smil01240 (Biosynthesis of cofactors - Salvia miltiorrhiza (redroot sage))
Pfam	PF00438 (S-AdoMet_synt_N); PF02772 (S-AdoMet_synt_M); PF02773 (S-AdoMet_synt_C)
InterPro	-
eggNOG	-
NR	GeneID:130997816

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cytoplasm	细胞质	1.00000	`XP_057779235.1`
2	Cytosol	细胞质基质	1.00000	`XP_057779235.1`
3	Nucleus	细胞核	0.00000	`XP_057779235.1`
4	Chromosome	染色体	0.00000	`XP_057779235.1`
5	Centromere	着丝粒	0.00000	`XP_057779235.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr8:33327818`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B97
`Chr8:33327909`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	A18,B33,B49,C32,C68
`Chr8:33327960`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	A22,B101,B71,C78,C80
`Chr8:33328470`	`TG`	`T`	1bp_deletion	frameshift_variant	2	C47,C69
`Chr8:33328470`	`TG`	`T`	1bp_deletion	CDS_variant	2	C47,C69
`Chr8:33328734`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B2,B33,C68
`Chr8:33328738`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B2,B33,C68
`Chr8:33328798`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	B125,B36,B94,C10,C79

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057779235.1

390 aa

195

390

S-AdoMet_synt_N

S-AdoMet_synt_M

S-AdoMet_synt_C

PF00438 S-AdoMet_synt_N 4-101 aa PF02772 S-AdoMet_synt_M 117-238 aa PF02773 S-AdoMet_synt_C 240-381 aa

XP_057779237.1

390 aa

195

390

S-AdoMet_synt_N

S-AdoMet_synt_M

S-AdoMet_synt_C

PF00438 S-AdoMet_synt_N 4-101 aa PF02772 S-AdoMet_synt_M 117-238 aa PF02773 S-AdoMet_synt_C 240-381 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057779235.1`	Pfam	`PF00438`	S-AdoMet_synt_N	Domain	4	101	9.7e-44	148.7	S-adenosylmethionine synthetase, N-terminal domain
`XP_057779235.1`	Pfam	`PF02772`	S-AdoMet_synt_M	Domain	117	238	5.5e-48	162.8	S-adenosylmethionine synthetase, central domain
`XP_057779235.1`	Pfam	`PF02773`	S-AdoMet_synt_C	Domain	240	381	2.3e-61	206.4	S-adenosylmethionine synthetase, C-terminal domain
`XP_057779237.1`	Pfam	`PF00438`	S-AdoMet_synt_N	Domain	4	101	9.7e-44	148.7	S-adenosylmethionine synthetase, N-terminal domain
`XP_057779237.1`	Pfam	`PF02772`	S-AdoMet_synt_M	Domain	117	238	5.5e-48	162.8	S-adenosylmethionine synthetase, central domain
`XP_057779237.1`	Pfam	`PF02773`	S-AdoMet_synt_C	Domain	240	381	2.3e-61	206.4	S-adenosylmethionine synthetase, C-terminal domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057923252.1
AGTATTAGTGCCTTCCGTCAGCAGTAGCGCGTCAATTTTTTTTTTTTCATTTCACCAACCCCACGTACAATACCTCATGCGCCTAGTACAACACGCAAACTGGAGAAAACTCTGATATTTATAATTTACAACTCACCTACAGCTCAAAAGTATCAGCCACCGTCGATCGAGCTTCCGACCGCCAACTGGCACCATCTTAGTTACACCACAGGGTAGGATATTTTTTATTCTTTCTTCTTTATTTTTATTTGGCATTTGAA...

XM_057923254.1
TACTTCTCTCCTCCTGCTCCATATTGATCTGCAGATCTAGACCTCTTCTTTTGCCAGAAGGTATGCATAACGATTGATTCTCGATTTATTGTGTTAGATTTGGTAATCGTGTTCTGTTATTGTTTTAGATCTAGTGTTTTTTTTACACTTTTGTGCTATACAGATTTGTGAATTTATGGTAATTGAATGTCGGCAGTTTTCTTGTTTTCGACGATGAGTGTGCTGCTATACCGTTTAGTTTACCGGATCGGAGAATTTCA...

CDS

2 records

下载 CDS FASTA

LOC130997816
ATGGATACCTTCCTGTTCACCTCAGAGTCTGTCAATGAAGGACACCCCGACAAGCTCTGCGACCAAGTCTCAGATGCCATTCTTGATGCTTGCCTAGAGCAGGACCCAGAGAGCAAAGTAGCATGTGAAACTTGCACCAAGACTAATATGGTCATGGTCTTTGGTGAGATCACAACCAAGGCTAAGGTGGACTATGAAAAGATAGTTCGTGATACCTGCAGAGGGATTGGATTCACCTCACCAGATGTTGGCCTTGATGC...

Protein

2 records

下载 Protein FASTA

XP_057779235.1
MDTFLFTSESVNEGHPDKLCDQVSDAILDACLEQDPESKVACETCTKTNMVMVFGEITTKAKVDYEKIVRDTCRGIGFTSPDVGLDADHCKVLVNIEQQSPDIAQGVHGHLTKKPEEIGAGDQGHMFGYATDETPELMPLTHVLATKLGAKLTEVRKNKTCAWLRPDGKTQVTVEYKNEGGAMVPIRVHTVLISTQHDETVTNDQIAADLKEHVIKPVIPAQYLDDKTIFHLNPSGRFVIGGPHGDAGLTGRKIIIDTYG...

XP_057779237.1
MDTFLFTSESVNEGHPDKLCDQVSDAILDACLEQDPESKVACETCTKTNMVMVFGEITTKAKVDYEKIVRDTCRGIGFTSPDVGLDADHCKVLVNIEQQSPDIAQGVHGHLTKKPEEIGAGDQGHMFGYATDETPELMPLTHVLATKLGAKLTEVRKNKTCAWLRPDGKTQVTVEYKNEGGAMVPIRVHTVLISTQHDETVTNDQIAADLKEHVIKPVIPAQYLDDKTIFHLNPSGRFVIGGPHGDAGLTGRKIIIDTYG...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

跳转到基因组浏览器