Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr08G003248`

染色体: Chr08 坐标: 33445925-33452876 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr08G003248`
名称	SmilChr08G003248
描述	uncharacterized SmilChr08G003248
染色体 / SeqID	Chr08 / NC_080394.1
坐标与链方向	33445925 - 33452876 / `-`

ID 对照

NCBI Gene ID	`LOC130997819`
GeneID	`130997819`
locus_tag	`-`
NCBI Name	`LOC130997819`
原始查询	`SmilChr08G003248`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	Transducin/WD40 repeat-like superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:831835]; symbol=AT5G03450; hit=AT5G03450; species=arabidopsis; confidence=medium
产物	Transducin/WD40 repeat-like superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:831835]; symbol=AT5G03450; hit=AT5G03450; species=arabidopsis; confidence=medium
Arabidopsis	`AT5G03450` (AT5G03450) Transducin/WD40 repeat-like superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:831835] identity=43.8; qcov=0.802; evalue=6.27e-134; confidence=medium
Rice	`Os10g0545600` - identity=34.8; qcov=0.792; evalue=2.37e-86; confidence=low
GO	GO:0005515 (protein binding); GO:0005634 (nucleus); GO:0016567 (protein ubiquitination); GO:0036297 (interstrand cross-link repair); GO:0061630 (ubiquitin protein ligase activity)
KEGG	-
Pfam	PF13445 (zf-RING_UBOX); PF13639 (zf-RING_2); PF23419 (WD40_RFWD3)
InterPro	-
eggNOG	-
NR	GeneID:130997819

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057779240.1`
2	Chromosome	染色体	0.00000	`XP_057779240.1`
3	Centromere	着丝粒	0.00000	`XP_057779240.1`
4	Chromatin	染色质	0.00000	`XP_057779240.1`
5	Telomere	端粒	0.00000	`XP_057779240.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr8:33446140`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C66
`Chr8:33446281`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B99,C87
`Chr8:33447625`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B127,B13
`Chr8:33447635`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B122
`Chr8:33447803`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	A6,B13,B33,C20,C30
`Chr8:33448875`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C13
`Chr8:33450959`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	A7,B80,C25
`Chr8:33452398`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B35,C59
`Chr8:33452399`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C58

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057779240.1

651 aa

326

651

zf-RING_2

WD40_RFWD3

PF13639 zf-RING_2 150-196 aa PF23419 WD40_RFWD3 320-646 aa

XP_057779241.1

650 aa

325

650

zf-RING_UBOX

zf-RING_2

WD40_RFWD3

PF13445 zf-RING_UBOX 150-192 aa PF13639 zf-RING_2 150-195 aa PF23419 WD40_RFWD3 319-645 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057779240.1`	Pfam	`PF13639`	zf-RING_2	Domain	150	196	1.8e-08	35.2	Ring finger domain
`XP_057779240.1`	Pfam	`PF23419`	WD40_RFWD3	Repeat	320	646	1.8e-29	103.9	E3 ubiquitin-protein ligase RFWD3 WD40 domain
`XP_057779241.1`	Pfam	`PF13445`	zf-RING_UBOX	Domain	150	192	3.7e-06	27.5	RING-type zinc-finger
`XP_057779241.1`	Pfam	`PF13639`	zf-RING_2	Domain	150	195	1.2e-08	35.8	Ring finger domain
`XP_057779241.1`	Pfam	`PF23419`	WD40_RFWD3	Repeat	319	645	1.8e-29	103.9	E3 ubiquitin-protein ligase RFWD3 WD40 domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057923257.1
ATAATAGCTTTAGAGTGAAAATTTTGCAACCAACATTTTGCTTTAATATATGTACAAGAAAATTTTCCCGCTTAATTATCCCCCACCCTCGATTTCAAGCAGGACACCTCAATTCTCAAACCCTAACTCCAAATCCCCCTAGCTCAGCCCAAATTGTTCGAAGATTATGAGTACATGGGATGCTGACTACTTGGATTATTTGGAGGTGGTGACACGGCGGGCACTCCAACTGCCCACATCCGATCGCAACGACGATGACG...

XM_057923258.1
TAATAGCTTTAGAGTGAAAATTTTGCAACCAACATTTTGCTTTAATATATGTACAAGAAAATTTTCCCGCTTAATTATCCCCCACCCTCGATTTCAAGCAGGACACCTCAATTCTCAAACCCTAACTCCAAATCCCCCTAGCTCAGCCCAAATTGTTCGAAGATTATGAGTACATGGGATGCTGACTACTTGGATTATTTGGAGGTGGTGACACGGCGGGCACTCCAACTGCCCACATCCGATCGCAACGACGATGACGA...

CDS

2 records

下载 CDS FASTA

LOC130997819
ATGAGTACATGGGATGCTGACTACTTGGATTATTTGGAGGTGGTGACACGGCGGGCACTCCAACTGCCCACATCCGATCGCAACGACGATGACGATGACGATGATGATGATGATGACGATGACGATGACGATGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGCAGGATGGAGATGATGATGGAATTCCCGGAACGACGTCGGGTAACTTGATGAACGACAATAACGGGAATGAGATCCTTCCCGACACTACTGCATC...

Protein

2 records

下载 Protein FASTA

XP_057779240.1
MSTWDADYLDYLEVVTRRALQLPTSDRNDDDDDDDDDDDDDDDDEEEEEEEEEEEQDGDDDGIPGTTSGNLMNDNNGNEILPDTTASLPQGVVVVDDTDDGDDVAEAERECSSLRKGVSGDKGASTASLNGDDDGLLREFDRGEIDGLFCPICLEAWTSGGDHHVCCLPCGHIYGLSCIKKWLSRQGSHKQCPQCKKKCRMKDIRLIYATRLVAIDGDLQKRVQSFEAKCAILEKKSADWGKKEVEWKKREADLRKQVQY...

XP_057779241.1
MSTWDADYLDYLEVVTRRALQLPTSDRNDDDDDDDDDDDDDDDDEEEEEEEEEEEQDGDDDGIPGTTSGNLMNDNNGNEILPDTTASLPQGVVVVDDTDDGDDVAEAERECSSLRKGVSGDKGASTASLNGDDDGLLREFDRGEIDGLFCPICLEAWTSGGDHHVCCLPCGHIYGLSCIKKWLSRQGSHKCPQCKKKCRMKDIRLIYATRLVAIDGDLQKRVQSFEAKCAILEKKSADWGKKEVEWKKREADLRKQVQYL...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

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