当前解析结果
SmilChr08G003252| 统一新 Gene ID | SmilChr08G003252 |
|---|---|
| 名称 | SmilChr08G003252 |
| 描述 | ACT domain-containing protein ACR10-like |
| 染色体 / SeqID | Chr08 / NC_080394.1 |
| 坐标与链方向 | 33488661 - 33491813 / + |
| NCBI Gene ID | LOC130997823 |
|---|---|
| GeneID | 130997823 |
| locus_tag | - |
| NCBI Name | LOC130997823 |
| 原始查询 | SmilChr08G003252 |
| 来源 | GFF basic annotation; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | ACT domain-containing protein ACR10-like |
| 产物 | ACT domain-containing protein ACR10-like |
| Arabidopsis | AT2G36840 (ACR10)ACT-like superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:818257] identity=62.9; qcov=1.01; evalue=0; confidence=high |
| Rice | Os09g0570900 (B1331F11.3-1)- identity=59.3; qcov=1.02; evalue=2.88e-176; confidence=high |
| GO | - |
| KEGG | - |
| Pfam | PF01842 (ACT); PF22754 (bHLH-TF_ACT-like_plant); PF24914 (ACR10_N); PF24926 (ACT_ACR9_C); PF24931 (ACT_ACR9_3rd) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130997823 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytoplasm | 细胞质 | 1.00000 | XP_057779242.1 |
| 2 | Cytosol | 细胞质基质 | 1.00000 | XP_057779242.1 |
| 3 | Nucleus | 细胞核 | 0.80000 | XP_057779242.1 |
| 4 | Nucleoplasm | 核质 | 0.20000 | XP_057779242.1 |
| 5 | Chromosome | 染色体 | 0.00000 | XP_057779242.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr8:33489578 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | B130,B64,B65,B88,C3 |
Chr8:33489631 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C87 |
Chr8:33489641 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | A21,B35,C22,C4,C73 |
Chr8:33489703 |
GCA |
G |
2bp_deletion | frameshift_variant | 1 | B36 |
Chr8:33489703 |
GCA |
G |
2bp_deletion | CDS_variant | 1 | B36 |
Chr8:33491142 |
C |
CT |
1bp_insertion | frameshift_variant | 91 | A10,A11,A15,A16,A2,A20,A25,A3,A4,A6,A8,A9,B100,B101,B103,B105,B107,B109,B110,B117,B127,B132,B133,B134,B136,B15,B16,B18,B19,B21,B23,B24,B26,B27,B28,B29,B30,B37,B38,B39,B41,B42,B43,B48,B5,B50,B51,B60,B64,B65,B7,B70,B71,B72,B74,B82,B84,B88,B89,B97,C11,C14,C17,C26,C33,C35,C37,C39,C48,C5,C51,C52,C55,C56,C57,C63,C64,C66,C67,C69,C70,C71,C74,C76,C77,C8,C83,C84,D2,D3,D7 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057779242.1PF24914
ACR10_N 11-86 aa
PF22754
bHLH-TF_ACT-like_plant 109-158 aa
PF01842
ACT 111-164 aa
PF24931
ACT_ACR9_3rd 233-330 aa
PF24926
ACT_ACR9_C 331-409 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057779242.1 |
Pfam | PF24914 |
ACR10_N | Domain | 11 | 86 | 4.4e-46 | 154.9 | ACT domain-containing protein ACR10, N-terminal |
XP_057779242.1 |
Pfam | PF22754 |
bHLH-TF_ACT-like_plant | Domain | 109 | 158 | 3.2e-11 | 43.9 | Plant bHLH transcription factor, ACT-like domain |
XP_057779242.1 |
Pfam | PF01842 |
ACT | Domain | 111 | 164 | 3.9e-12 | 46.4 | ACT domain |
XP_057779242.1 |
Pfam | PF24931 |
ACT_ACR9_3rd | Domain | 233 | 330 | 2e-57 | 192.0 | ACR9-like, ACT-like domain |
XP_057779242.1 |
Pfam | PF24926 |
ACT_ACR9_C | Domain | 331 | 409 | 1.3e-41 | 141.1 | ACT domain-containing protein ACR9, C-terminal |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。