Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr08G003275`

染色体: Chr08 坐标: 33863736-33866465 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr08G003275`
名称	SmilChr08G003275
描述	uncharacterized SmilChr08G003275
染色体 / SeqID	Chr08 / NC_080394.1
坐标与链方向	33863736 - 33866465 / `+`

ID 对照

NCBI Gene ID	`LOC130997844`
GeneID	`130997844`
locus_tag	`-`
NCBI Name	`LOC130997844`
原始查询	`SmilChr08G003275`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	Ankyrin repeat family protein [Source:NCBI gene (formerly Entrezgene);Acc:820147]; symbol=AT3G09890; hit=AT3G09890; species=arabidopsis; confidence=high
产物	Ankyrin repeat family protein [Source:NCBI gene (formerly Entrezgene);Acc:820147]; symbol=AT3G09890; hit=AT3G09890; species=arabidopsis; confidence=high
Arabidopsis	`AT3G09890` (AT3G09890) Ankyrin repeat family protein [Source:NCBI gene (formerly Entrezgene);Acc:820147] identity=61.4; qcov=0.99; evalue=1.77e-74; confidence=high
Rice	`Os03g0145800` - identity=61.6; qcov=0.676; evalue=1.04e-55; confidence=high
GO	GO:0005515 (protein binding); GO:0016567 (protein ubiquitination); GO:0045732 (positive regulation of protein catabolic process)
KEGG	-
Pfam	PF00023 (Ank); PF12796 (Ank_2); PF13606 (Ank_3); PF13637 (Ank_4); PF13857 (Ank_5)
InterPro	-
eggNOG	-
NR	GeneID:130997844

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057779258.1`
2	Cytoplasm	细胞质	1.00000	`XP_057779258.1`
3	Cytosol	细胞质基质	0.40000	`XP_057779258.1`
4	Chromosome	染色体	0.00000	`XP_057779258.1`
5	Centromere	着丝粒	0.00000	`XP_057779258.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr8:33863919`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B29,B81,B90,C53
`Chr8:33863925`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B81,B90,C53
`Chr8:33863927`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B81,B90,C53,C6
`Chr8:33863939`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B81,B90,C53
`Chr8:33863973`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B39,B41
`Chr8:33863975`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	C30,C6
`Chr8:33863981`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D10
`Chr8:33866277`	`CA`	`C`	1bp_deletion	frameshift_variant	1	B77
`Chr8:33866277`	`CA`	`C`	1bp_deletion	CDS_variant	1	B77

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057779258.1

204 aa

102

204

Ank_4

Ank_2

Ank_5

Ank_3

Ank

Ank_4

Ank

Ank_2

Ank_3

Ank

Ank_5

PF13637 Ank_4 42-91 aa PF12796 Ank_2 42-131 aa PF13857 Ank_5 69-109 aa PF13606 Ank_3 70-98 aa PF00023 Ank 70-101 aa PF13637 Ank_4 81-124 aa PF00023 Ank 103-131 aa PF12796 Ank_2 129-180 aa PF13606 Ank_3 144-171 aa PF00023 Ank 144-174 aa PF13857 Ank_5 144-183 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057779258.1`	Pfam	`PF13637`	Ank_4	Repeat	42	91	6.3e-19	68.3	Ankyrin repeats (many copies)
`XP_057779258.1`	Pfam	`PF12796`	Ank_2	Repeat	42	131	3.5e-25	89.1	Ankyrin repeats (3 copies)
`XP_057779258.1`	Pfam	`PF13857`	Ank_5	Repeat	69	109	4e-22	78.8	Ankyrin repeats (many copies)
`XP_057779258.1`	Pfam	`PF13606`	Ank_3	Repeat	70	98	3.9e-15	55.0	Ankyrin repeat
`XP_057779258.1`	Pfam	`PF00023`	Ank	Repeat	70	101	8.9e-25	86.1	Ankyrin repeat
`XP_057779258.1`	Pfam	`PF13637`	Ank_4	Repeat	81	124	6.3e-19	68.3	Ankyrin repeats (many copies)
`XP_057779258.1`	Pfam	`PF00023`	Ank	Repeat	103	131	8.9e-25	86.1	Ankyrin repeat
`XP_057779258.1`	Pfam	`PF12796`	Ank_2	Repeat	129	180	3.5e-25	89.1	Ankyrin repeats (3 copies)
`XP_057779258.1`	Pfam	`PF13606`	Ank_3	Repeat	144	171	3.9e-15	55.0	Ankyrin repeat
`XP_057779258.1`	Pfam	`PF00023`	Ank	Repeat	144	174	8.9e-25	86.1	Ankyrin repeat
`XP_057779258.1`	Pfam	`PF13857`	Ank_5	Repeat	144	183	4e-22	78.8	Ankyrin repeats (many copies)

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057923275.1
AAAGGAAGTAGCAGTTTTGGGCAAGTAGGCCTCGCTGCTTTAAGTTATTATGGGCCTTCGTTATTGGGCTTACAATAAAGTTGTTGGGTTAAATTTTGAAGCAATCCATCAGAAGCTGCTACTTGGCTACCAGTACCACTGTCGCGTACGGATCATTCAAAGATGGCGGTGGCTGACGGACGACGCGACGACGACGAAGACGGCGCCGCTCTCTTCGAGGAAGAAGGCGTGGACTTCGCCGACGACATCGATCATTTCGA...

CDS

1 records

下载 CDS FASTA

LOC130997844
ATGGCGGTGGCTGACGGACGACGCGACGACGACGAAGACGGCGCCGCTCTCTTCGAGGAAGAAGGCGTGGACTTCGCCGACGACATCGATCATTTCGATACACCTATTCATCTCCGTCCCCTCGTTTCCGCTGCCGAGTCTGGCGACCTCGACGCTCTCCGCCAAGCCCTAGATGCTTTTGATGGTAACATTGATGAAATAGTGGAAGATGGTGATACTGTGCTTCATCTCACATGTCTCTATGGCCATTTGAATTGTGT...

Protein

1 records

下载 Protein FASTA

XP_057779258.1
MAVADGRRDDDEDGAALFEEEGVDFADDIDHFDTPIHLRPLVSAAESGDLDALRQALDAFDGNIDEIVEDGDTVLHLTCLYGHLNCVQFLLERGANLEAKDEDGAIPLHDACAGGYLEIAQLLLSSANDPDRVKRMLETIDMEGDTPLHHAARGEYANVVRLLLAYGASPSTTNLYGKTPAELVDAGTETRSILEEATGALLGH

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

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