当前解析结果
SmilChr08G003298| 统一新 Gene ID | SmilChr08G003298 |
|---|---|
| 名称 | SmilChr08G003298 |
| 描述 | uncharacterized SmilChr08G003298 |
| 染色体 / SeqID | Chr08 / NC_080394.1 |
| 坐标与链方向 | 34095014 - 34096724 / - |
| NCBI Gene ID | LOC130997861 |
|---|---|
| GeneID | 130997861 |
| locus_tag | - |
| NCBI Name | LOC130997861 |
| 原始查询 | SmilChr08G003298 |
| 来源 | GFF basic annotation; NCBI GO GAF; Arabidopsis/Rice homolog |
|---|---|
| 描述 | hit=Os08g0208700; species=rice; confidence=low |
| 产物 | hit=Os08g0208700; species=rice; confidence=low |
| Arabidopsis | AT3G42170 (DAYSLEEPER)BED zinc finger and hAT dimerization domain-containing protein DAYSLEEPER [Source:NCBI gene (formerly Entrezgene);Acc:3769417] identity=27.1; qcov=0.991; evalue=3.57e-07; confidence=low |
| Rice | Os08g0208700- identity=32; qcov=0.84; evalue=3.03e-16; confidence=low |
| GO | GO:0003677 (DNA binding) |
| KEGG | - |
| Pfam | - |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130997861 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 1.00000 | XP_057779271.1 |
| 2 | Chromosome | 染色体 | 0.00000 | XP_057779271.1 |
| 3 | Centromere | 着丝粒 | 0.00000 | XP_057779271.1 |
| 4 | Chromatin | 染色质 | 0.00000 | XP_057779271.1 |
| 5 | Telomere | 端粒 | 0.00000 | XP_057779271.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr8:34096100 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | A24 |
Chr8:34096109 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B108,B56,B96,D4 |
Chr8:34096221 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B1 |
Chr8:34096267 |
G |
A |
EMS_canonical_SNV | stop_gained | 3 | B128,B94,D10 |
Chr8:34096267 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B128,B94,D10 |
Chr8:34096270 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C40 |
Chr8:34096316 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B13,B78,C66 |
Chr8:34096323 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B12,C38,D7 |
Chr8:34096327 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D11 |
Chr8:34096359 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C6 |
Chr8:34096386 |
AT |
A |
1bp_deletion | frameshift_variant | 75 | A1,A10,A16,A22,A24,A25,A5,B100,B119,B127,B130,B135,B137,B138,B139,B17,B20,B25,B26,B27,B32,B33,B34,B38,B4,B40,B44,B46,B47,B5,B61,B62,B65,B69,B72,B74,B76,B78,B82,B84,B85,B95,B97,C11,C14,C15,C25,C27,C28,C29,C31,C44,C45,C49,C5,C52,C59,C6,C60,C62,C65,C69,C70,C71,C72,C73,C77,C78,C8,C80,C81,C83,C87,D4,D8 |
Chr8:34096397 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B5,C50 |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。