当前解析结果
SmilChr08G003299| 统一新 Gene ID | SmilChr08G003299 |
|---|---|
| 名称 | SmilChr08G003299 |
| 描述 | UDP-glycosyltransferase 73D1-like |
| 染色体 / SeqID | Chr08 / NC_080394.1 |
| 坐标与链方向 | 34098113 - 34100335 / - |
| NCBI Gene ID | LOC130997862 |
|---|---|
| GeneID | 130997862 |
| locus_tag | - |
| NCBI Name | LOC130997862 |
| 原始查询 | SmilChr08G003299 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | UDP-glycosyltransferase 73D1-like |
| 产物 | UDP-glycosyltransferase 73D1-like |
| Arabidopsis | AT3G53150 (UGT73D1)UDP-glucosyl transferase 73D1 [Source:NCBI gene (formerly Entrezgene);Acc:824481] identity=59.1; qcov=1.02; evalue=0; confidence=high |
| Rice | Os01g0176200- identity=49.2; qcov=0.983; evalue=3.67e-159; confidence=high |
| GO | GO:0008194 (UDP-glycosyltransferase activity) |
| KEGG | - |
| Pfam | PF00201 (UDPGT); PF26168 (Glyco_transf_N) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130997862 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytosol | 细胞质基质 | 1.00000 | XP_057779272.1 |
| 2 | Cytoplasm | 细胞质 | 0.80000 | XP_057779272.1 |
| 3 | Nucleus | 细胞核 | 0.00000 | XP_057779272.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057779272.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057779272.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr8:34098835 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C87 |
Chr8:34098954 |
TG |
T |
1bp_deletion | frameshift_variant | 1 | C26 |
Chr8:34098954 |
TG |
T |
1bp_deletion | CDS_variant | 1 | C26 |
Chr8:34099101 |
TA |
T |
1bp_deletion | frameshift_variant | 1 | B18 |
Chr8:34099101 |
TA |
T |
1bp_deletion | CDS_variant | 1 | B18 |
Chr8:34099258 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | B41,B62,C31,C41,C75 |
Chr8:34099534 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B69 |
Chr8:34099674 |
AG |
A |
1bp_deletion | frameshift_variant | 1 | B85 |
Chr8:34099674 |
AG |
A |
1bp_deletion | CDS_variant | 1 | B85 |
Chr8:34099917 |
TG |
T |
1bp_deletion | frameshift_variant | 1 | D8 |
Chr8:34099917 |
TG |
T |
1bp_deletion | CDS_variant | 1 | D8 |
Chr8:34099947 |
CG |
C |
1bp_deletion | frameshift_variant | 1 | B121 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057779272.1PF26168
Glyco_transf_N 8-247 aa
PF00201
UDPGT 274-430 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057779272.1 |
Pfam | PF26168 |
Glyco_transf_N | Domain | 8 | 247 | 6.9e-08 | 33.4 | Glycosyltransferase, N-terminal domain |
XP_057779272.1 |
Pfam | PF00201 |
UDPGT | Family | 274 | 430 | 3.8e-19 | 69.6 | UDP-glucoronosyl and UDP-glucosyl transferase |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。