当前解析结果
SmilChr08G003300| 统一新 Gene ID | SmilChr08G003300 |
|---|---|
| 名称 | SmilChr08G003300 |
| 描述 | protein FAR1-RELATED SEQUENCE 5-like |
| 染色体 / SeqID | Chr08 / NC_080394.1 |
| 坐标与链方向 | 34105070 - 34106955 / + |
| NCBI Gene ID | LOC130998376 |
|---|---|
| GeneID | 130998376 |
| locus_tag | - |
| NCBI Name | LOC130998376 |
| 原始查询 | SmilChr08G003300 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | protein FAR1-RELATED SEQUENCE 5-like |
| 产物 | protein FAR1-RELATED SEQUENCE 5-like |
| Arabidopsis | AT4G38180 (FRS5)FAR1-related sequence 5 [Source:NCBI gene (formerly Entrezgene);Acc:829974] identity=24.9; qcov=0.847; evalue=1.81e-46; confidence=weak |
| Rice | Os12g0160900- identity=31.8; qcov=0.74; evalue=8.3e-60; confidence=low |
| GO | GO:0006355 (regulation of DNA-templated transcription) |
| KEGG | - |
| Pfam | PF10551 (MULE); PF21056 (ZSWIM1-3_RNaseH-like) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130998376 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 1.00000 | XP_057779779.1 |
| 2 | Cytoplasm | 细胞质 | 0.20000 | XP_057779779.1 |
| 3 | Chromosome | 染色体 | 0.00000 | XP_057779779.1 |
| 4 | Centromere | 着丝粒 | 0.00000 | XP_057779779.1 |
| 5 | Chromatin | 染色质 | 0.00000 | XP_057779779.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr8:34105135 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | A13,C61,C66,C75 |
Chr8:34105166 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B121,C4 |
Chr8:34105169 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B126,C48,C61 |
Chr8:34105177 |
T |
TA |
1bp_insertion | frameshift_variant | 7 | B105,B114,B36,B4,C54,C65,D5 |
Chr8:34105178 |
GCT |
G |
2bp_deletion | frameshift_variant | 7 | B105,B114,B36,B4,C54,C65,D5 |
Chr8:34105201 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | A21,C61 |
Chr8:34105207 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C66 |
Chr8:34105217 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B1,B16,B22 |
Chr8:34105230 |
TGG |
T |
2bp_deletion | frameshift_variant | 49 | A16,B102,B108,B112,B113,B12,B120,B121,B140,B20,B24,B26,B32,B35,B37,B4,B53,B64,B66,B81,B82,B85,B89,B9,B94,B98,C1,C11,C14,C2,C28,C30,C33,C38,C4,C41,C44,C5,C54,C58,C6,C65,C69,C82,C86,D10,D4,D6,D7 |
Chr8:34105235 |
C |
CCA |
2bp_insertion | frameshift_variant | 50 | A16,B102,B108,B112,B113,B12,B120,B121,B140,B20,B24,B26,B32,B35,B37,B4,B53,B64,B66,B81,B82,B85,B89,B9,B94,B98,C1,C11,C14,C2,C28,C30,C33,C38,C4,C41,C42,C44,C5,C54,C58,C6,C65,C69,C82,C86,D10,D4,D6,D7 |
Chr8:34105240 |
TGC |
T |
2bp_deletion | frameshift_variant | 23 | A21,B102,B108,B11,B115,B136,B14,B20,B30,B35,B53,B63,B66,B94,B98,C11,C14,C41,C52,C58,C61,C64,C69 |
Chr8:34105244 |
A |
AT |
1bp_insertion | frameshift_variant | 15 | A21,A9,B104,B11,B115,B128,B14,B30,B63,C12,C36,C52,C61,C64,C66 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057779779.1PF21056
ZSWIM1-3_RNaseH-like 86-192 aa
PF10551
MULE 111-205 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057779779.1 |
Pfam | PF21056 |
ZSWIM1-3_RNaseH-like | Domain | 86 | 192 | 1.6e-06 | 28.8 | Zinc finger SWIM domain-containing protein 1/3, RNaseH-like domain |
XP_057779779.1 |
Pfam | PF10551 |
MULE | Domain | 111 | 205 | 6.2e-25 | 88.1 | MULE transposase domain |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。