Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr08G003319`

染色体: Chr08 坐标: 34422845-34427363 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr08G003319`
名称	SmilChr08G003319
描述	DEAD-box ATP-dependent RNA helicase 38
染色体 / SeqID	Chr08 / NC_080394.1
坐标与链方向	34422845 - 34427363 / `-`

ID 对照

NCBI Gene ID	`LOC130997880`
GeneID	`130997880`
locus_tag	`-`
NCBI Name	`LOC130997880`
原始查询	`SmilChr08G003319`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	DEAD-box ATP-dependent RNA helicase 38
产物	DEAD-box ATP-dependent RNA helicase 38
Arabidopsis	`AT3G53110` (LOS4) P-loop containing nucleoside triphosphate hydrolases superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:824477] identity=64.9; qcov=0.935; evalue=0; confidence=high
Rice	`Os03g0158200` (OsRH38) - identity=63.9; qcov=0.836; evalue=1.5e-157; confidence=high
GO	GO:0003723 (RNA binding); GO:0003724 (RNA helicase activity); GO:0005524 (ATP binding); GO:0005634 (nucleus); GO:0010494 (cytoplasmic stress granule); GO:0016973 (poly(A)+ mRNA export from nucleus)
KEGG	smil03013 (Nucleocytoplasmic transport - Salvia miltiorrhiza (redroot sage)); smil03015 (mRNA surveillance pathway - Salvia miltiorrhiza (redroot sage))
Pfam	PF00270 (DEAD); PF00271 (Helicase_C); PF04851 (ResIII)
InterPro	-
eggNOG	-
NR	GeneID:130997880

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057779295.1`
2	Cytoplasm	细胞质	1.00000	`XP_057779295.1`
3	Cytosol	细胞质基质	0.60000	`XP_057779296.1`
4	Chromosome	染色体	0.00000	`XP_057779295.1`
5	Centromere	着丝粒	0.00000	`XP_057779295.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr8:34424263`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B30,B90,B92,C39
`Chr8:34424269`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B45
`Chr8:34425925`	`TC`	`T`	1bp_deletion	frameshift_variant	1	C17
`Chr8:34425925`	`TC`	`T`	1bp_deletion	CDS_variant	1	C17
`Chr8:34426548`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B55
`Chr8:34427184`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B108,B56,B96,D4

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057779295.1

496 aa

248

496

DEAD

ResIII

Helicase_C

PF00270 DEAD 113-284 aa PF04851 ResIII 125-280 aa PF00271 Helicase_C 331-445 aa

XP_057779296.1

414 aa

207

414

DEAD

ResIII

Helicase_C

PF00270 DEAD 113-284 aa PF04851 ResIII 125-280 aa PF00271 Helicase_C 331-407 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057779295.1`	Pfam	`PF00270`	DEAD	Domain	113	284	9.2e-38	130.3	DEAD/DEAH box helicase
`XP_057779295.1`	Pfam	`PF04851`	ResIII	Family	125	280	7.6e-08	33.2	Type III restriction enzyme, res subunit
`XP_057779295.1`	Pfam	`PF00271`	Helicase_C	Domain	331	445	8.9e-28	97.5	Helicase conserved C-terminal domain
`XP_057779296.1`	Pfam	`PF00270`	DEAD	Domain	113	284	5e-38	131.2	DEAD/DEAH box helicase
`XP_057779296.1`	Pfam	`PF04851`	ResIII	Family	125	280	4.8e-08	33.8	Type III restriction enzyme, res subunit
`XP_057779296.1`	Pfam	`PF00271`	Helicase_C	Domain	331	407	2.1e-15	57.6	Helicase conserved C-terminal domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057923312.1
TTTTTTTTTAACCTTACCCGGATAGCTATGAGTTGCTTAATTCTTACGGGGTTTTGACTTTTTGACTCACAGGTCACACTGTGTGTAAATCAGTATTTGGCCATCGCTATTTAAAAATTATTTGCTCTTTCTCTCTATAACTCTCTCTTCTCCAATGGCCGACAACGAGAGCACTGATTCGTCTACCACCGCCACTATCACCCCGGCGTCCTCGAATCCGCTGGAGACGAAGCGGTGGGCGGATGTCGCTGATGAGGCGG...

XM_057923313.1
ACACTGTGTGTAAATCAGTATTTGGCCATCGCTATTTAAAAATTATTTGCTCTTTCTCTCTATAACTCTCTCTTCTCCAATGGCCGACAACGAGAGCACTGATTCGTCTACCACCGCCACTATCACCCCGGCGTCCTCGAATCCGCTGGAGACGAAGCGGTGGGCGGATGTCGCTGATGAGGCGGATGCGGAGCAGCAAGCCGAATCTTCGTTGGCAGATGTCAAATTGGATTCCTTGGCTATCGATGAGTCCAAACAAC...

CDS

2 records

下载 CDS FASTA

LOC130997880
ATGGCCGACAACGAGAGCACTGATTCGTCTACCACCGCCACTATCACCCCGGCGTCCTCGAATCCGCTGGAGACGAAGCGGTGGGCGGATGTCGCTGATGAGGCGGATGCGGAGCAGCAAGCCGAATCTTCGTTGGCAGATGTCAAATTGGATTCCTTGGCTATCGATGAGTCCAAACAACCTTCTGTCGGCCTTACTGATCCCGATGACTCCACCATTGAAGCTGTTACATCGGGGGACACTCCATATACATCAGCTAA...

Protein

2 records

下载 Protein FASTA

XP_057779295.1
MADNESTDSSTTATITPASSNPLETKRWADVADEADAEQQAESSLADVKLDSLAIDESKQPSVGLTDPDDSTIEAVTSGDTPYTSAKRFEDLNLSPELLKGLYVEMKFEQPSKIQAISLPMILTPPHKNLIAQAHNGSGKTTCFVLGMLSRVDPKILGPQALCICPTRELAIQNMEVLLKMGKFTGITSELAIPPAEANYIPISKMGPVTAQVIIGTPGTISKWLQHKKLGLSQMKILVFDEADHMLAMGGFRDESVRIM...

XP_057779296.1
MADNESTDSSTTATITPASSNPLETKRWADVADEADAEQQAESSLADVKLDSLAIDESKQPSVGLTDPDDSTIEAVTSGDTPYTSAKRFEDLNLSPELLKGLYVEMKFEQPSKIQAISLPMILTPPHKNLIAQAHNGSGKTTCFVLGMLSRVDPKILGPQALCICPTRELAIQNMEVLLKMGKFTGITSELAIPPAEANYIPISKMGPVTAQVIIGTPGTISKWLQHKKLGLSQMKILVFDEADHMLAMGGFRDESVRIM...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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