Gene Card

Search by standard ID, NCBI Gene ID, GeneID, locus tag, transcript ID, protein ID, or a manually reviewed literature gene name. The page resolves the query to a Red Sage gene and integrates coordinates, sequences, annotations, subcellular localization, EMS variants, and downloads.

Resolved gene

`SmilChr08G003323`

Chromosome: Chr08 Coordinates: 34500005-34505128 Strand: + Biotype: protein_coding

Basic Information

Standard Gene ID	`SmilChr08G003323`
Name	SmilChr08G003323
Description	aspartic proteinase 36-like
Chromosome / SeqID	Chr08 / NC_080394.1
Coordinates and Strand	34500005 - 34505128 / `+`

ID Mapping

NCBI Gene ID	`LOC130997884`
GeneID	`130997884`
locus_tag	`-`
NCBI Name	`LOC130997884`
Original query	`SmilChr08G003323`

Open ID mapping

Functional Annotation

Source	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
Description	aspartic proteinase 36-like
Product	aspartic proteinase 36-like
Arabidopsis	`AT2G36670` (AT2G36670) Eukaryotic aspartyl protease family protein [Source:NCBI gene (formerly Entrezgene);Acc:818239] identity=63.6; qcov=0.959; evalue=0; confidence=high
Rice	`Os01g0777200` (P0413G02.28) - identity=57; qcov=0.906; evalue=0; confidence=high
GO	GO:0004190 (aspartic-type endopeptidase activity); GO:0006508 (proteolysis)
KEGG	-
Pfam	PF00026 (Asp); PF14541 (TAXi_C); PF14543 (TAXi_N)
InterPro	-
eggNOG	-
NR	GeneID:130997884

Open annotation module

Subcellular Localization Top 5

Rank	Location	Chinese	Score	Protein ID
1	Vacuole	液泡	0.60000	`XP_057779298.1`
2	Cell wall	细胞壁	0.20000	`XP_057779298.1`
3	Cell membrane	细胞膜	0.20000	`XP_057779298.1`
4	Nucleus	细胞核	0.00000	`XP_057779298.1`
5	Chromosome	染色体	0.00000	`XP_057779298.1`

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EMS Mutant Variants

The table shows the first 12 candidate EMS variants for this gene. Open the EMS module for full filtering and downloads.

Position	REF	ALT	Type	Effect	Carriers	Samples
`Chr8:34500330`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C14
`Chr8:34501001`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B107,B17,C13,C24
`Chr8:34501325`	`G`	`GTT`	2bp_insertion	frameshift_variant	93	A10,A11,A14,A16,A18,A20,A22,A23,A25,A6,B1,B10,B104,B106,B109,B110,B115,B119,B120,B122,B124,B126,B131,B132,B133,B135,B136,B137,B140,B20,B27,B3,B34,B37,B38,B39,B4,B43,B44,B45,B46,B48,B50,B51,B57,B6,B60,B63,B66,B67,B7,B8,B81,B84,B88,B91,B93,B97,B99,C1,C10,C11,C14,C15,C2,C23,C24,C25,C26,C28,C3,C32,C39,C41,C46,C52,C59,C64,C66,C69,C7,C70,C73,C75,C8,C81,C82,C86,C9,D10,D11,D2,D6
`Chr8:34501382`	`C`	`CCA`	2bp_insertion	frameshift_variant	4	A25,B113,B50,C18
`Chr8:34501382`	`C`	`CCA`	2bp_insertion	CDS_variant	4	A25,B113,B50,C18
`Chr8:34502807`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	A16,B134,B74,D7
`Chr8:34504049`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C65
`Chr8:34504057`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B74,C73

Open EMS variants

Predicted Protein Domains

Domain results are from the Pfam-A HMM database and HMMER hmmscan; positions are amino-acid coordinates on the corresponding protein sequence.

XP_057779298.1

494 aa

247

494

TAXi_N

Asp

TAXi_C

PF14543 TAXi_N 86-271 aa PF00026 Asp 86-442 aa PF14541 TAXi_C 289-441 aa

XP_057779299.1

490 aa

245

490

TAXi_N

Asp

TAXi_C

PF14543 TAXi_N 82-267 aa PF00026 Asp 82-438 aa PF14541 TAXi_C 285-437 aa

Protein ID	Source	Domain ID	Domain name	Type	Start aa	End aa	E-value	Score	Description
`XP_057779298.1`	Pfam	`PF14543`	TAXi_N	Domain	86	271	2.6e-41	142.4	Xylanase inhibitor N-terminal
`XP_057779298.1`	Pfam	`PF00026`	Asp	Domain	86	442	3.6e-30	106.2	Eukaryotic aspartyl protease
`XP_057779298.1`	Pfam	`PF14541`	TAXi_C	Domain	289	441	6.7e-23	82.0	Xylanase inhibitor C-terminal
`XP_057779299.1`	Pfam	`PF14543`	TAXi_N	Domain	82	267	2.5e-41	142.5	Xylanase inhibitor N-terminal
`XP_057779299.1`	Pfam	`PF00026`	Asp	Domain	82	438	3.5e-30	106.3	Eukaryotic aspartyl protease
`XP_057779299.1`	Pfam	`PF14541`	TAXi_C	Domain	285	437	6.6e-23	82.0	Xylanase inhibitor C-terminal

cDNA / CDS / Protein Sequences

Download genomic DNA (gene region only)

Every public gene has transcript sequence from the reference annotation. Protein-coding genes also have CDS and protein sequences. CDS and protein downloads do not apply to noncoding RNA. Version suffixes of original accessions are retained.

cDNA

2 records

Download cDNA FASTA

XM_057923315.1
AAAACAAATCTGCAAAACATACTTTTTTTTTAGTATAATGAAAGAGAAAGAGAGAATGCGTGCGTGTAGTGTGTGAATGGTGTATTTGTTTATGTACCTCGGACACCATTACTCCATTCTCAGCACTCACCTTTTCACTTTTCCCATTCTTATTTATTTTTTCGTTTACCATACATTTGCTAGAAAATTCGTACAACTTCTATACTCTATATTATACTATAGTGCGGCTTTTTGAGCGCCGGCGATGACTGTCCGGCTAA...

XM_057923316.1
AATGAAAGAGAAAGAGAGAATGCGTGCGTGTAGTGTGTGAATGGTGTATTTGTTTATGTACCTCGGACACCATTACTCCATTCTCAGCACTCACCTTTTCACTTTTCCCATTCTTATTTATTTTTTCGTTTACCATACATTTGCTAGAAAATTCGTACAACTTCTATACTCTATATTATACTATAGTGCGGCTTTTTGAGCGCCGGCGATGACTGTCCGGCTAATGACTGCGGTGGCGGTCGCAGTCGCTATTGCGGCCG...

CDS

2 records

Download CDS FASTA

LOC130997884
ATGACTGTCCGGCTAATGACTGCGGTGGCGGTCGCAGTCGCTATTGCGGCCGCCACTTTCCTGTCGACGGTGCGTGGCGCCGGAATTCAAGGAGTGCTTACTCTGCAGAGAGCGTTTCCAATTGATGAGAAGGTGGAGCTCGAGATTATTAAAGCTCGGGACCGTGCTCGCCACGCGCGTATTTTGCAGAGCTTTTCCGGCGGGATTGTTGATTTTCAGGTCGTCGGGACCTTCGACCCGTACGTCGTTGGACTTTATTT...

Protein

2 records

Download Protein FASTA

XP_057779298.1
MTVRLMTAVAVAVAIAAATFLSTVRGAGIQGVLTLQRAFPIDEKVELEIIKARDRARHARILQSFSGGIVDFQVVGTFDPYVVGLYFTKVRLGTPPRDFNVQIDTGSDILWVACSSCTDCPQSSGLGIPLNFFDPAASSTVSSMSCSDNICASIVQSAAAECFGESNQCGYSFQYADQSGTAGFYVSDLLYFDSILGTSLVANSSAPIVFGCSTSLFGDLAKSTKALDGIFGFGRQDISVISQLSSYKIAPKVFSHCLKG...

XP_057779299.1
MTVRLMTAVAVAVAIAAATFLSTVRGAGIQGVLTLQRAFPIDEKVELEIIKARDRARHARILQSFSGGIVDFQVVGTFDPLYFTKVRLGTPPRDFNVQIDTGSDILWVACSSCTDCPQSSGLGIPLNFFDPAASSTVSSMSCSDNICASIVQSAAAECFGESNQCGYSFQYADQSGTAGFYVSDLLYFDSILGTSLVANSSAPIVFGCSTSLFGDLAKSTKALDGIFGFGRQDISVISQLSSYKIAPKVFSHCLKGDGNG...

Flanking Sequence Downloads

Upstream/downstream length is capped at 10000 bp. Negative-strand genes are reverse-complemented so the exported FASTA follows transcriptional 5′ to 3′ orientation.

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