当前解析结果
SmilChr08G003324| 统一新 Gene ID | SmilChr08G003324 |
|---|---|
| 名称 | SmilChr08G003324 |
| 描述 | uncharacterized SmilChr08G003324 |
| 染色体 / SeqID | Chr08 / NC_080394.1 |
| 坐标与链方向 | 34505435 - 34511841 / - |
| NCBI Gene ID | LOC130997883 |
|---|---|
| GeneID | 130997883 |
| locus_tag | - |
| NCBI Name | LOC130997883 |
| 原始查询 | SmilChr08G003324 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | catalytics [Source:NCBI gene (formerly Entrezgene);Acc:831028]; symbol=AT5G11560; hit=AT5G11560; species=arabidopsis; confidence=high |
| 产物 | catalytics [Source:NCBI gene (formerly Entrezgene);Acc:831028]; symbol=AT5G11560; hit=AT5G11560; species=arabidopsis; confidence=high |
| Arabidopsis | AT5G11560 (AT5G11560)catalytics [Source:NCBI gene (formerly Entrezgene);Acc:831028] identity=65.7; qcov=0.998; evalue=0; confidence=high |
| Rice | Os05g0230600- identity=59.2; qcov=0.984; evalue=0; confidence=high |
| GO | GO:0005515 (protein binding); GO:0034975 (protein folding in endoplasmic reticulum); GO:0072546 (EMC complex) |
| KEGG | - |
| Pfam | PF07774 (EMC1_C); PF13360 (PQQ_2); PF25293 (Beta-prop_EMC1_N) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130997883 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Endoplasmic reticulum | 内质网 | 1.00000 | XP_057779297.1 |
| 2 | Endoplasmic reticulum membrane | 内质网膜 | 0.80000 | XP_057779297.1 |
| 3 | Endoplasmic reticulum lumen | 内质网腔 | 0.40000 | XP_057779297.1 |
| 4 | Golgi apparatus | 高尔基体 | 0.20000 | XP_057779297.1 |
| 5 | Nucleus | 细胞核 | 0.00000 | XP_057779297.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr8:34506003 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | A16,B134,B74,D7 |
Chr8:34507129 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B55 |
Chr8:34507141 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B7,C33,C78 |
Chr8:34507197 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B140,C82 |
Chr8:34507330 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | A7,B107,C25 |
Chr8:34507377 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B76,C39,C46,C52 |
Chr8:34507909 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C12 |
Chr8:34507956 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C60 |
Chr8:34509272 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C68 |
Chr8:34509274 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B118 |
Chr8:34509420 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | A20,B118,B91,C53,C84 |
Chr8:34509466 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B46 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057779297.1PF25293
Beta-prop_EMC1_N 24-413 aa
PF13360
PQQ_2 52-258 aa
PF07774
EMC1_C 487-943 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057779297.1 |
Pfam | PF25293 |
Beta-prop_EMC1_N | Repeat | 24 | 413 | 8.7e-134 | 447.4 | EMC1 N-terminal beta-propeller domain |
XP_057779297.1 |
Pfam | PF13360 |
PQQ_2 | Repeat | 52 | 258 | 1e-13 | 52.2 | Outer membrane protein assembly factor BamB |
XP_057779297.1 |
Pfam | PF07774 |
EMC1_C | Repeat | 487 | 943 | 9e-116 | 388.3 | ER membrane protein complex subunit 1, second beta-propeller |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。