Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr08G003355`

染色体: Chr08 坐标: 34953264-34957613 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr08G003355`
名称	SmilChr08G003355
描述	probable 3-deoxy-D-manno-octulosonic acid transferase, mitochondrial
染色体 / SeqID	Chr08 / NC_080394.1
坐标与链方向	34953264 - 34957613 / `-`

ID 对照

NCBI Gene ID	`LOC130997911`
GeneID	`130997911`
locus_tag	`-`
NCBI Name	`LOC130997911`
原始查询	`SmilChr08G003355`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	probable 3-deoxy-D-manno-octulosonic acid transferase, mitochondrial
产物	probable 3-deoxy-D-manno-octulosonic acid transferase%2C mitochondrial
Arabidopsis	`AT5G03770` (KDTA) KDO transferase A [Source:NCBI gene (formerly Entrezgene);Acc:831727] identity=60.6; qcov=0.952; evalue=6.45e-152; confidence=high
Rice	`Os01g0857300` - identity=54.2; qcov=0.535; evalue=2.18e-64; confidence=medium
GO	GO:0005886 (plasma membrane); GO:0009245 (lipid A biosynthetic process); GO:0016740 (transferase activity)
KEGG	smil00540 (Lipopolysaccharide biosynthesis - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage))
Pfam	PF04413 (Glycos_transf_N)
InterPro	-
eggNOG	-
NR	GeneID:130997911

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Mitochondrion	线粒体	1.00000	`XP_057779323.1`
2	Chloroplast	叶绿体	0.60000	`XP_057779322.1`
3	Mitochondrion matrix	线粒体基质	0.20000	`XP_057779318.1`
4	Mitochondrion membrane	线粒体膜	0.20000	`XP_057779323.1`
5	Peroxisome	过氧化物酶体	0.20000	`XP_057779318.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr8:34953557`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B41
`Chr8:34953610`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C14
`Chr8:34953887`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	A22,B58,B64,C84
`Chr8:34954055`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C14
`Chr8:34954101`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B61
`Chr8:34956791`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	A1,B62,C31,C41,C75

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057779318.1

464 aa

232

464

Glycos_transf_N

PF04413 Glycos_transf_N 41-221 aa

XP_057779319.1

463 aa

232

463

Glycos_transf_N

PF04413 Glycos_transf_N 41-220 aa

XP_057779320.1

451 aa

226

451

Glycos_transf_N

PF04413 Glycos_transf_N 41-221 aa

XP_057779321.1

450 aa

225

450

Glycos_transf_N

PF04413 Glycos_transf_N 41-220 aa

XP_057779322.1

389 aa

194

389

Glycos_transf_N

PF04413 Glycos_transf_N 41-221 aa

XP_057779323.1

376 aa

188

376

Glycos_transf_N

PF04413 Glycos_transf_N 41-221 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057779318.1`	Pfam	`PF04413`	Glycos_transf_N	Domain	41	221	2.4e-54	184.3	3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase)
`XP_057779319.1`	Pfam	`PF04413`	Glycos_transf_N	Domain	41	220	8e-55	185.9	3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase)
`XP_057779320.1`	Pfam	`PF04413`	Glycos_transf_N	Domain	41	221	2.2e-54	184.4	3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase)
`XP_057779321.1`	Pfam	`PF04413`	Glycos_transf_N	Domain	41	220	7.5e-55	186.0	3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase)
`XP_057779322.1`	Pfam	`PF04413`	Glycos_transf_N	Domain	41	221	1.7e-54	184.8	3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase)
`XP_057779323.1`	Pfam	`PF04413`	Glycos_transf_N	Domain	41	221	1.5e-54	184.9	3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase)

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

6 records

下载 cDNA FASTA

XM_057923335.1
CATCGGAGACGCCGGAGGTGAGGAAGACGGTGGTTGTTGAGTGAGTTAGGGAGAAATTTTGGGGGGGCTGAGTTACTGTTGGCGACGGCAACTGAATTGCGGCTGAGGAAGAAATTAGTTGTAAAGGCTAGAAAACATTTTTATAACGGCAGATTCAATAGCTTAATAACTCTGCCCTATCTTCTGATAGCTATTATAGATCCATACCATTACCATATATACGTATTTTCTTGGTGTGATTCAACTTCTCCTCCTCCCAC...

XM_057923336.1
GGAGACGCCGGAGGTGAGGAAGACGGTGGTTGTTGAGTGAGTTAGGGAGAAATTTTGGGGGGGCTGAGTTACTGTTGGCGACGGCAACTGAATTGCGGCTGAGGAAGAAATTAGTTGTAAAGGCTAGAAAACATTTTTATAACGGCAGATTCAATAGCTTAATAACTCTGCCCTATCTTCTGATAGCTATTATAGATCCATACCATTACCATATATACGTATTTTCTTGGTGTGATTCAACTTCTCCTCCTCCCACAGCC...

CDS

6 records

下载 CDS FASTA

LOC130997911
ATGGCGATAACAACCGGTAAAATAGTGTACAAAATTTACCGAGCACTAACCTACGGCATATCACCGTTAATGCGCCTTCACCTACGGTGGCGCAGAATCCGGGGCCGGGAACACCCCCTTCGCTGGTCGGAACGCCTCGGCCGCCCCTCCGAGCCTCGCCCCGCCGGTCGCCTCATCTGGTTCCACGCCGTCTCCTTGGGTGAAGGATTGGCCGCGATTCCTGTGATAAAGTGCTGTTTAGAGAGGAGGCCGGATGTGAC...

Protein

6 records

下载 Protein FASTA

XP_057779318.1
MAITTGKIVYKIYRALTYGISPLMRLHLRWRRIRGREHPLRWSERLGRPSEPRPAGRLIWFHAVSLGEGLAAIPVIKCCLERRPDVTVLMTTSTVSAFEVIKERLPSNVIYQQFAPLDIPYSMDAFLQYWRPNAVMLMESELWPNLIMGAARNGIALALLNGRISTKSFRNWSYPVILPLIKLMLSKFSLILPLSTIQGIQFQLLQAPPHIISYTGDLKFAITDFDNSVGVKRSLTEFQAQLSHRKVWMASSIHKGEDEV...

XP_057779319.1
MAITTGKIVYKIYRALTYGISPLMRLHLRWRRIRGREHPLRWSERLGRPSEPRPAGRLIWFHAVSLGEGLAAIPVIKCCLERRPDVTVLMTTSTVSAFEVIKERLPSNVIYQFAPLDIPYSMDAFLQYWRPNAVMLMESELWPNLIMGAARNGIALALLNGRISTKSFRNWSYPVILPLIKLMLSKFSLILPLSTIQGIQFQLLQAPPHIISYTGDLKFAITDFDNSVGVKRSLTEFQAQLSHRKVWMASSIHKGEDEVF...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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