当前解析结果
SmilChr08G003401| 统一新 Gene ID | SmilChr08G003401 |
|---|---|
| 名称 | SmilChr08G003401 |
| 描述 | PAN domain-containing protein At5g03700 |
| 染色体 / SeqID | Chr08 / NC_080394.1 |
| 坐标与链方向 | 35869835 - 35872426 / + |
| NCBI Gene ID | LOC130997948 |
|---|---|
| GeneID | 130997948 |
| locus_tag | - |
| NCBI Name | LOC130997948 |
| 原始查询 | SmilChr08G003401 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | PAN domain-containing protein At5g03700 |
| 产物 | PAN domain-containing protein At5g03700 |
| Arabidopsis | AT5G03700 (AT5G03700)D-mannose binding lectin protein with Apple-like carbohydrate-binding domain-containing protein [Source:NCBI gene (formerly Entrezgene);Acc:831753] identity=51.2; qcov=0.956; evalue=1.93e-153; confidence=high |
| Rice | Os02g0527900- identity=41.2; qcov=1.01; evalue=6.02e-101; confidence=medium |
| GO | GO:0048544 (recognition of pollen) |
| KEGG | - |
| Pfam | PF00024 (PAN_1); PF00954 (S_locus_glycop); PF01453 (B_lectin) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130997948 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cell membrane | 细胞膜 | 1.00000 | XP_057779369.1 |
| 2 | Nucleus | 细胞核 | 0.00000 | XP_057779369.1 |
| 3 | Chromosome | 染色体 | 0.00000 | XP_057779369.1 |
| 4 | Centromere | 着丝粒 | 0.00000 | XP_057779369.1 |
| 5 | Chromatin | 染色质 | 0.00000 | XP_057779369.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr8:35870227 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B127,C22 |
Chr8:35870240 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | A19,B137,B87 |
Chr8:35870253 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | D10 |
Chr8:35870457 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B50 |
Chr8:35870466 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B50 |
Chr8:35870557 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | C64,C66 |
Chr8:35871427 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B32 |
Chr8:35871495 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | A7,C14,C25 |
Chr8:35871629 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | A25,A4,B37,C82,D4 |
Chr8:35871729 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D11 |
Chr8:35871743 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | A9,C55 |
Chr8:35871776 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | A25,B37,C82,D4 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057779369.1PF01453
B_lectin 96-161 aa
PF00954
S_locus_glycop 247-305 aa
PF00024
PAN_1 355-393 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057779369.1 |
Pfam | PF01453 |
B_lectin | Repeat | 96 | 161 | 2.1e-08 | 35.3 | D-mannose binding lectin |
XP_057779369.1 |
Pfam | PF00954 |
S_locus_glycop | Domain | 247 | 305 | 2.3e-06 | 28.8 | S-locus glycoprotein domain |
XP_057779369.1 |
Pfam | PF00024 |
PAN_1 | Domain | 355 | 393 | 7.1e-05 | 23.3 | PAN domain |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。