当前解析结果
SmilChr08G003420| 统一新 Gene ID | SmilChr08G003420 |
|---|---|
| 名称 | SmilChr08G003420 |
| 描述 | uncharacterized SmilChr08G003420 |
| 染色体 / SeqID | Chr08 / NC_080394.1 |
| 坐标与链方向 | 36414726 - 36435775 / + |
| NCBI Gene ID | LOC130996554 |
|---|---|
| GeneID | 130996554 |
| locus_tag | - |
| NCBI Name | LOC130996554 |
| 原始查询 | SmilChr08G003420 |
| 来源 | GFF basic annotation; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | hit=Os12g0231700; species=rice; confidence=low |
| 产物 | hit=Os12g0231700; species=rice; confidence=low |
| Arabidopsis | -- |
| Rice | Os12g0231700- identity=25.9; qcov=0.672; evalue=9.73e-13; confidence=low |
| GO | - |
| KEGG | - |
| Pfam | PF03004 (Transposase_24) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130996554 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 1.00000 | XP_057777814.1 |
| 2 | Chromosome | 染色体 | 0.00000 | XP_057777814.1 |
| 3 | Centromere | 着丝粒 | 0.00000 | XP_057777814.1 |
| 4 | Chromatin | 染色质 | 0.00000 | XP_057777814.1 |
| 5 | Telomere | 端粒 | 0.00000 | XP_057777814.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr8:36433431 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B26,C5 |
Chr8:36433459 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B118,B136,B139,C43 |
Chr8:36433497 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B101,B55,B77,C62 |
Chr8:36433592 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B13,C8,D7 |
Chr8:36433700 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B121 |
Chr8:36433831 |
G |
A |
EMS_canonical_SNV | stop_gained | 18 | A14,A5,B10,B102,B106,B107,B12,B17,B23,B53,B78,B97,C13,C16,C24,C27,C37,C42 |
Chr8:36433837 |
C |
CAA |
2bp_insertion | frameshift_variant | 15 | A15,A20,A9,B110,B130,B35,B48,B52,B61,B65,B88,C1,C21,C50,C76 |
Chr8:36433894 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | B139,B61,B83,B97,C59 |
Chr8:36433930 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C42 |
Chr8:36433952 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B104,B73 |
Chr8:36434171 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D11 |
Chr8:36434319 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B109 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057777814.1PF03004
Transposase_24 165-284 aa
XP_057777815.1PF03004
Transposase_24 165-284 aa
XP_057777816.1PF03004
Transposase_24 165-284 aa
XP_057777817.1PF03004
Transposase_24 165-284 aa
XP_057777818.1PF03004
Transposase_24 165-284 aa
XP_057777819.1PF03004
Transposase_24 165-284 aa
XP_057777820.1PF03004
Transposase_24 165-284 aa
XP_057777821.1PF03004
Transposase_24 165-284 aa
XP_057777822.1PF03004
Transposase_24 165-284 aa
XP_057777823.1PF03004
Transposase_24 165-284 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057777814.1 |
Pfam | PF03004 |
Transposase_24 | Family | 165 | 284 | 1.3e-11 | 45.5 | Plant transposase (Ptta/En/Spm family) |
XP_057777815.1 |
Pfam | PF03004 |
Transposase_24 | Family | 165 | 284 | 1.3e-11 | 45.5 | Plant transposase (Ptta/En/Spm family) |
XP_057777816.1 |
Pfam | PF03004 |
Transposase_24 | Family | 165 | 284 | 1.3e-11 | 45.5 | Plant transposase (Ptta/En/Spm family) |
XP_057777817.1 |
Pfam | PF03004 |
Transposase_24 | Family | 165 | 284 | 1.3e-11 | 45.5 | Plant transposase (Ptta/En/Spm family) |
XP_057777818.1 |
Pfam | PF03004 |
Transposase_24 | Family | 165 | 284 | 1.3e-11 | 45.5 | Plant transposase (Ptta/En/Spm family) |
XP_057777819.1 |
Pfam | PF03004 |
Transposase_24 | Family | 165 | 284 | 1.3e-11 | 45.5 | Plant transposase (Ptta/En/Spm family) |
XP_057777820.1 |
Pfam | PF03004 |
Transposase_24 | Family | 165 | 284 | 1.3e-11 | 45.5 | Plant transposase (Ptta/En/Spm family) |
XP_057777821.1 |
Pfam | PF03004 |
Transposase_24 | Family | 165 | 284 | 1.3e-11 | 45.5 | Plant transposase (Ptta/En/Spm family) |
XP_057777822.1 |
Pfam | PF03004 |
Transposase_24 | Family | 165 | 284 | 1.3e-11 | 45.5 | Plant transposase (Ptta/En/Spm family) |
XP_057777823.1 |
Pfam | PF03004 |
Transposase_24 | Family | 165 | 284 | 1.3e-11 | 45.5 | Plant transposase (Ptta/En/Spm family) |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
11 records
下载 cDNA FASTA10 records
下载 CDS FASTA10 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。