当前解析结果
SmilChr08G003438| 统一新 Gene ID | SmilChr08G003438 |
|---|---|
| 名称 | SmilChr08G003438 |
| 描述 | uncharacterized SmilChr08G003438 |
| 染色体 / SeqID | Chr08 / NC_080394.1 |
| 坐标与链方向 | 36687765 - 36693560 / - |
| NCBI Gene ID | LOC130998413 |
|---|---|
| GeneID | 130998413 |
| locus_tag | - |
| NCBI Name | LOC130998413 |
| 原始查询 | SmilChr08G003438 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | hit=Os04g0191000; species=rice; confidence=low |
| 产物 | hit=Os04g0191000; species=rice; confidence=low |
| Arabidopsis | ATMG00860- identity=37.1; qcov=0.074; evalue=1.85e-19; confidence=weak |
| Rice | Os04g0191000- identity=28.8; qcov=0.515; evalue=1.43e-89; confidence=low |
| GO | GO:0003676 (nucleic acid binding); GO:0015074 (DNA integration) |
| KEGG | - |
| Pfam | PF00078 (RVT_1); PF00665 (rve); PF13650 (Asp_protease_2); PF17917 (RT_RNaseH); PF17919 (RT_RNaseH_2); PF17921 (Integrase_H2C2) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130998413 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytoplasm | 细胞质 | 1.00000 | XP_057779811.1 |
| 2 | Nucleus | 细胞核 | 0.60000 | XP_057779811.1 |
| 3 | Cytoplasmic granule | 细胞质颗粒 | 0.40000 | XP_057779811.1 |
| 4 | Cytoplasmic ribonucleoprotein granule | Cytoplasmic ribonucleoprotein granule | 0.20000 | XP_057779811.1 |
| 5 | Chromosome | 染色体 | 0.00000 | XP_057779811.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr8:36687822 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B68,C54 |
Chr8:36687831 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C61 |
Chr8:36687835 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C34 |
Chr8:36687862 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C54 |
Chr8:36687867 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B99,C34,C36,C61 |
Chr8:36687994 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B106,B108,B99 |
Chr8:36688071 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | C12,C37,C9 |
Chr8:36688079 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B126,B96 |
Chr8:36688115 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B72,C19 |
Chr8:36688130 |
G |
A |
EMS_canonical_SNV | stop_gained | 9 | A24,A7,A9,B126,B35,B46,C2,C23,C25 |
Chr8:36688178 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B4,B9 |
Chr8:36688205 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B44 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057779811.1PF13650
Asp_protease_2 606-698 aa
PF00078
RVT_1 963-1118 aa
PF17919
RT_RNaseH_2 1182-1280 aa
PF17917
RT_RNaseH 1210-1310 aa
PF17921
Integrase_H2C2 1410-1467 aa
PF00665
rve 1488-1581 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057779811.1 |
Pfam | PF13650 |
Asp_protease_2 | Domain | 606 | 698 | 1.4e-06 | 29.7 | Aspartyl protease |
XP_057779811.1 |
Pfam | PF00078 |
RVT_1 | Domain | 963 | 1118 | 9.9e-30 | 104.6 | Reverse transcriptase (RNA-dependent DNA polymerase) |
XP_057779811.1 |
Pfam | PF17919 |
RT_RNaseH_2 | Domain | 1182 | 1280 | 5.3e-32 | 110.6 | RNase H-like domain found in reverse transcriptase |
XP_057779811.1 |
Pfam | PF17917 |
RT_RNaseH | Domain | 1210 | 1310 | 5.7e-37 | 126.8 | RNase H-like domain found in reverse transcriptase |
XP_057779811.1 |
Pfam | PF17921 |
Integrase_H2C2 | Domain | 1410 | 1467 | 7.1e-11 | 42.8 | Integrase zinc binding domain |
XP_057779811.1 |
Pfam | PF00665 |
rve | Domain | 1488 | 1581 | 1.3e-16 | 61.4 | Integrase core domain |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。