Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr08G003439`

染色体: Chr08 坐标: 36714766-36717843 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr08G003439`
名称	SmilChr08G003439
描述	uncharacterized SmilChr08G003439
染色体 / SeqID	Chr08 / NC_080394.1
坐标与链方向	36714766 - 36717843 / `+`

ID 对照

NCBI Gene ID	`LOC130996574`
GeneID	`130996574`
locus_tag	`-`
NCBI Name	`LOC130996574`
原始查询	`SmilChr08G003439`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Arabidopsis/Rice homolog
描述	Basic-leucine zipper (bZIP) transcription factor family protein [Source:NCBI gene (formerly Entrezgene);Acc:838535]; symbol=AT1G19490; hit=AT1G19490; species=arabidopsis; confidence=low
产物	Basic-leucine zipper (bZIP) transcription factor family protein [Source:NCBI gene (formerly Entrezgene);Acc:838535]; symbol=AT1G19490; hit=AT1G19490; species=arabidopsis; confidence=low
Arabidopsis	`AT1G19490` (AT1G19490) Basic-leucine zipper (bZIP) transcription factor family protein [Source:NCBI gene (formerly Entrezgene);Acc:838535] identity=33.8; qcov=1.16; evalue=4.23e-25; confidence=low
Rice	`Os11g0154900` (OsbZIP80) - identity=52.6; qcov=0.272; evalue=1.6e-18; confidence=weak
GO	GO:0003700 (DNA-binding transcription factor activity); GO:0005634 (nucleus); GO:0006355 (regulation of DNA-templated transcription); GO:0043565 (sequence-specific DNA binding)
KEGG	-
Pfam	-
InterPro	-
eggNOG	-
NR	GeneID:130996574

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057777851.1`
2	Chromosome	染色体	0.00000	`XP_057777851.1`
3	Centromere	着丝粒	0.00000	`XP_057777851.1`
4	Chromatin	染色质	0.00000	`XP_057777851.1`
5	Telomere	端粒	0.00000	`XP_057777851.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr8:36715459`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	A6,C20,C65
`Chr8:36715891`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B44
`Chr8:36717219`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B104
`Chr8:36717310`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B74,C73
`Chr8:36717398`	`GCA`	`G`	2bp_deletion	frameshift_variant	1	B97
`Chr8:36717398`	`GCA`	`G`	2bp_deletion	CDS_variant	1	B97
`Chr8:36717438`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B104
`Chr8:36717655`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C40

进入 EMS 突变库

预测功能结构域

当前发布数据中，此基因没有可展示的 Pfam 结构域命中。

进入结构域查询

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

3 records

下载 cDNA FASTA

XM_057921868.1
CTGCTTTTAAACTCTGCGTTTCTGAAAAACATCCTTTTCTTTCACAGCAAATCATGGAATGCGGTGCCGCTGCGGCGGAGGACGACGACGCTGCCACGCTGCTGGAGGCGGCCCAAGCTCTCGCGGGGATGGGCCAGCACCCGCTGCTTATTTCTCAGGAGCAACAAGCATCAACTGATTTTGCACCAAGCCCTCAAAAAATCACTCATCAATCCAATCCTCTCATGATGAAGTTCAGGCGGAAACTCACGGAGGCCGAG...

XM_057921869.1
CTGCTTTTAAACTCTGCGTTTCTGAAAAACATCCTTTTCTTTCACAGCAAATCATGGAATGCGGTGCCGCTGCGGCGGAGGACGACGACGCTGCCACGCTGCTGGAGGCGGCCCAAGCTCTCGCGGGGATGGGCCAGCACCCGCTGCTTATTTCTCAGGAGCAACAAGCATCAACTGATTTTGCACCAAGCCCTCAAAAAATCACTCATCAATCCAATCCTCTCATGATGAAGTTCAGGCGGAAACTCACGGAGGCCGAG...

CDS

3 records

下载 CDS FASTA

LOC130996574
ATGGAATGCGGTGCCGCTGCGGCGGAGGACGACGACGCTGCCACGCTGCTGGAGGCGGCCCAAGCTCTCGCGGGGATGGGCCAGCACCCGCTGCTTATTTCTCAGGAGCAACAAGCATCAACTGATTTTGCACCAAGCCCTCAAAAAATCACTCATCAATCCAATCCTCTCATGATGAAGTTCAGGCGGAAACTCACGGAGGCCGAGAAAGAGGAAAGGAAGCTTCGCCATATAATGGCGAATAGAGAGTCTGCTAGACA...

Protein

3 records

下载 Protein FASTA

XP_057777851.1
MECGAAAAEDDDAATLLEAAQALAGMGQHPLLISQEQQASTDFAPSPQKITHQSNPLMMKFRRKLTEAEKEERKLRHIMANRESARQTIRRRQAMHLELTKKAADVLEENENLKKHKELMVEDFNSLRERNEFLKARLAEAQKVVAGDTKEEPDSSEAEKTCSAATATTPIFHQNQPPSLAPCFWPFAVPSSDVFPFQCVSHPHLLQLPRPPGDTPCLHSTVTPLFIVPVPWLLPLVAQSSTGGNMGAEAYNPMQNVSAD...

XP_057777852.1
MECGAAAAEDDDAATLLEAAQALAGMGQHPLLISQEQQASTDFAPSPQKITHQSNPLMMKFRRKLTEAEKEERKLRHIMANRESARQTIRRRQAMHLELTKKAADVLEENENLKKHKELMVEDFNSLRERNEFLKARLAEAQKVVAGDTKEEPDSSEAEKTCSAATATTPIFHQNQPPSLAPCFWPFAVPSSDVFPFQCVSHPHLLQLPRPPGDTPCLHSTIVIPEHTNPLLPSSCPGCSALCDALRISTLLGLARQATL...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

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