Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr08G003440`

染色体: Chr08 坐标: 36717875-36723767 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr08G003440`
名称	SmilChr08G003440
描述	uncharacterized SmilChr08G003440
染色体 / SeqID	Chr08 / NC_080394.1
坐标与链方向	36717875 - 36723767 / `-`

ID 对照

NCBI Gene ID	`LOC130996573`
GeneID	`130996573`
locus_tag	`-`
NCBI Name	`LOC130996573`
原始查询	`SmilChr08G003440`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Arabidopsis/Rice homolog
描述	Transducin/WD40 repeat-like superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:838534]; symbol=AT1G19485; hit=AT1G19485; species=arabidopsis; confidence=medium
产物	Transducin/WD40 repeat-like superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:838534]; symbol=AT1G19485; hit=AT1G19485; species=arabidopsis; confidence=medium
Arabidopsis	`AT1G19485` (AT1G19485) Transducin/WD40 repeat-like superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:838534] identity=41.9; qcov=0.94; evalue=1.98e-151; confidence=medium
Rice	`Os01g0858000` - identity=39.2; qcov=0.759; evalue=8.7e-103; confidence=medium
GO	GO:0000127 (transcription factor TFIIIC complex); GO:0003677 (DNA binding); GO:0005515 (protein binding); GO:0006383 (transcription by RNA polymerase III)
KEGG	-
Pfam	-
InterPro	-
eggNOG	-
NR	GeneID:130996573

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057777849.1`
2	Nucleoplasm	核质	1.00000	`XP_057777850.1`
3	Nuclear body	核内小体	0.20000	`XP_057777850.1`
4	Chromosome	染色体	0.00000	`XP_057777849.1`
5	Centromere	着丝粒	0.00000	`XP_057777849.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr8:36718652`	`TTG`	`T`	2bp_deletion	frameshift_variant	1	B100
`Chr8:36718652`	`TTG`	`T`	2bp_deletion	CDS_variant	1	B100
`Chr8:36718724`	`TA`	`T`	1bp_deletion	frameshift_variant	1	C77
`Chr8:36718724`	`TA`	`T`	1bp_deletion	CDS_variant	1	C77
`Chr8:36718742`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C52
`Chr8:36720404`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C81
`Chr8:36720837`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B44
`Chr8:36721137`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B107,B69,B73
`Chr8:36722069`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B66,B8,B88
`Chr8:36722192`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C87
`Chr8:36722287`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B105,B51,C35
`Chr8:36722423`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C81

进入 EMS 突变库

预测功能结构域

当前发布数据中，此基因没有可展示的 Pfam 结构域命中。

进入结构域查询

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057921866.1
AGAATTTTGGCTCCATCCAATGAGCCATGGAAATCGACGAGGATGCTCCCCTTGTTCAATCGCTCAACGCGTTCAAGCGAAACAGGAGACTTGCTCAGAATAAGAAACTGCCCGAAGATATTGATCCCGCCCAATTGCCTCCCGCCGATGACGCTCCGCCGAAGATTCTAGTTTCTGAATTCGACTATTCCGTCGAGAATCACTTCAAAGCCGTTGATACCATCTCCAGACTGTGTGGATATGCCGATACACTCAACGTT...

XM_057921867.1
AGACATTGGAGAGATTTTAATTATAAGCCGCGAATTGTGAGATTTGCTTGTCAGCATAATTCGGAGAAGAAAGATGTTATAGGCGAGGTAACCTTACCTCAATTTTCAGCTGCAGCGGTTCCTGAGAAGGATATTCGGAATGGGAGTGAAGTTGGTGTGGAAATTATATTTTGTAATGCATGTCGGAGGTTCAGTCTGGGCATTAGACTGGTGCCCTAGAGTTGATCGGAATCCTGAGAATTGCATTAATTCTGAGTTTG...

CDS

2 records

下载 CDS FASTA

LOC130996573
ATGGAAATCGACGAGGATGCTCCCCTTGTTCAATCGCTCAACGCGTTCAAGCGAAACAGGAGACTTGCTCAGAATAAGAAACTGCCCGAAGATATTGATCCCGCCCAATTGCCTCCCGCCGATGACGCTCCGCCGAAGATTCTAGTTTCTGAATTCGACTATTCCGTCGAGAATCACTTCAAAGCCGTTGATACCATCTCCAGACTGTGTGGATATGCCGATACACTCAACGTTAATGAAGCGGAGATTGAGCGCTTGTC...

LOC130996573
ATGGGAGTGAAGTTGGTGTGGAAATTATATTTTGTAATGCATGTCGGAGGTTCAGTCTGGGCATTAGACTGGTGCCCTAGAGTTGATCGGAATCCTGAGAATTGCATTAATTCTGAGTTTGTCGCTGTTGCTGCACATCCTCCTGATTCTTCATATCACAAGATTGGCGCCACTCTAACTGGAAGAGGAGCTGTCCAGATCTGGTGTTTCTTGACTATCTATGTAAAGGATGCACCTTCTCAAGGGAAGAAAAAACCAAG...

Protein

2 records

下载 Protein FASTA

XP_057777849.1
MEIDEDAPLVQSLNAFKRNRRLAQNKKLPEDIDPAQLPPADDAPPKILVSEFDYSVENHFKAVDTISRLCGYADTLNVNEAEIERLSNSINFLRHWRDFNYKPRIVRFACQHNSEKKDVIGEVTLPQFSAAAVPEKDIRNGSEVGVEIIKDFVMHVGGSVWALDWCPRVDRNPENCINSEFVAVAAHPPDSSYHKIGATLTGRGAVQIWCFLTIYVKDAPSQGKKKPRPIFKKKVTVKPKDLTVVPRPRGRPRKQPLTET...

XP_057777850.1
MGVKLVWKLYFVMHVGGSVWALDWCPRVDRNPENCINSEFVAVAAHPPDSSYHKIGATLTGRGAVQIWCFLTIYVKDAPSQGKKKPRPIFKKKVTVKPKDLTVVPRPRGRPRKQPLTETELTVVPRPRGRPKNKPLSDTVEKIDSDNQHVQPLAIECPMGSPGLNSSEGTSGNASKPEDCEGHPNALLLTGPKGRGNKRKAEQGNQIQNNSLHILRHCQQGQPPLVDPLTLASFSLDSKRPDNDIASISSFANPIPVNVA...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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