当前解析结果
SmilChr08G003443| 统一新 Gene ID | SmilChr08G003443 |
|---|---|
| 名称 | SmilChr08G003443 |
| 描述 | uncharacterized SmilChr08G003443 |
| 染色体 / SeqID | Chr08 / NC_080394.1 |
| 坐标与链方向 | 36808532 - 36809578 / - |
| NCBI Gene ID | LOC130998414 |
|---|---|
| GeneID | 130998414 |
| locus_tag | - |
| NCBI Name | LOC130998414 |
| 原始查询 | SmilChr08G003443 |
| 来源 | GFF basic annotation; Arabidopsis/Rice homolog |
|---|---|
| 描述 | zinc ion binding / nucleic acid binding protein [Source:NCBI gene (formerly Entrezgene);Acc:814629]; symbol=AT2G01050; hit=AT2G01050; species=arabidopsis; confidence=low |
| 产物 | zinc ion binding / nucleic acid binding protein [Source:NCBI gene (formerly Entrezgene);Acc:814629]; symbol=AT2G01050; hit=AT2G01050; species=arabidopsis; confidence=low |
| Arabidopsis | AT2G01050 (AT2G01050)zinc ion binding / nucleic acid binding protein [Source:NCBI gene (formerly Entrezgene);Acc:814629] identity=39.3; qcov=0.31; evalue=1.36e-09; confidence=low |
| Rice | -- |
| GO | - |
| KEGG | - |
| Pfam | - |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130998414 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytosol | 细胞质基质 | 0.80000 | XP_057779813.1 |
| 2 | Cytoplasm | 细胞质 | 0.60000 | XP_057779813.1 |
| 3 | Nucleus | 细胞核 | 0.00000 | XP_057779813.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057779813.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057779813.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr8:36808575 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B35 |
Chr8:36808609 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B69,B73 |
Chr8:36808681 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C73 |
Chr8:36808720 |
C |
CA |
1bp_insertion | frameshift_variant | 24 | A14,A5,B102,B106,B107,B12,B138,B17,B27,B32,B4,B53,B57,B78,B97,B99,C13,C24,C36,C37,C42,C46,C64,C66 |
Chr8:36808721 |
C |
CT |
1bp_insertion | frameshift_variant | 36 | A19,A2,A3,A8,B113,B117,B132,B133,B137,B2,B21,B26,B31,B36,B45,B47,B50,B55,B59,B60,B7,B70,B83,B84,B87,C17,C25,C33,C34,C56,C63,C67,C72,C74,C78,D3 |
Chr8:36808747 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B69,B73 |
Chr8:36808767 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B105,B51,C35 |
Chr8:36808771 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | A19,B137,B87,C59 |
Chr8:36808885 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B35 |
Chr8:36809071 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C14 |
Chr8:36809100 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D10 |
Chr8:36809127 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | A23 |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。