当前解析结果
SmilChr08G003513| 统一新 Gene ID | SmilChr08G003513 |
|---|---|
| 名称 | SmilChr08G003513 |
| 描述 | cell division protein FtsZ homolog 2-2, chloroplastic-like |
| 染色体 / SeqID | Chr08 / NC_080394.1 |
| 坐标与链方向 | 37681406 - 37686427 / + |
| NCBI Gene ID | LOC130996631 |
|---|---|
| GeneID | 130996631 |
| locus_tag | - |
| NCBI Name | LOC130996631 |
| 原始查询 | SmilChr08G003513 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | cell division protein FtsZ homolog 2-2, chloroplastic-like |
| 产物 | cell division protein FtsZ homolog 2-2%2C chloroplastic-like |
| Arabidopsis | AT3G52750 (FTSZ2-2)Tubulin/FtsZ family protein [Source:NCBI gene (formerly Entrezgene);Acc:824441] identity=74.8; qcov=1.02; evalue=0; confidence=high |
| Rice | Os03g0646100 (FtsZ2-1)- identity=76.1; qcov=0.901; evalue=0; confidence=high |
| GO | GO:0003924 (GTPase activity); GO:0005525 (GTP binding); GO:0005737 (cytoplasm); GO:0009507 (chloroplast); GO:0010020 (chloroplast fission) |
| KEGG | - |
| Pfam | PF00091 (Tubulin); PF12327 (FtsZ_C) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130996631 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Chloroplast | 叶绿体 | 1.00000 | XP_057777907.1 |
| 2 | Cytoplasm | 细胞质 | 0.40000 | XP_057777907.1 |
| 3 | Cytosol | 细胞质基质 | 0.20000 | XP_057777907.1 |
| 4 | Chloroplast stroma | 叶绿体基质 | 0.20000 | XP_057777907.1 |
| 5 | Nucleus | 细胞核 | 0.00000 | XP_057777907.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr8:37682119 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B4 |
Chr8:37682363 |
A |
ATT |
2bp_insertion | frameshift_variant | 175 | A10,A11,A14,A15,A19,A2,A21,A22,A23,A24,A25,A3,A4,A6,A7,A8,A9,B10,B100,B101,B103,B105,B106,B107,B109,B11,B110,B111,B112,B113,B118,B119,B12,B121,B122,B124,B125,B126,B127,B128,B129,B13,B131,B132,B134,B136,B137,B14,B16,B17,B19,B20,B21,B22,B23,B24,B26,B27,B29,B3,B30,B32,B33,B34,B35,B36,B37,B38,B4,B40,B42,B44,B45,B46,B50,B51,B52,B54,B55,B58,B59,B6,B60,B61,B62,B63,B64,B65,B66,B67,B69,B7,B70,B72,B73,B76,B79,B80,B81,B84,B86,B87,B88,B9,B90,B91,B93,B94,B96,B97,B98,B99,C10,C11,C12,C16,C17,C18,C19,C2,C20,C21,C22,C23,C24,C26,C27,C28,C29,C3,C32,C33,C34,C35,C36,C37,C39,C40,C41,C42,C44,C45,C47,C48,C49,C5,C52,C53,C57,C58,C59,C60,C61,C62,C64,C65,C66,C67,C68,C7,C70,C71,C72,C75,C77,C8,C80,C81,C86,C87,D1,D2,D4,D7,D8 |
Chr8:37682384 |
ATT |
A |
2bp_deletion | frameshift_variant | 209 | A1,A10,A11,A13,A14,A15,A18,A19,A2,A21,A22,A23,A24,A25,A3,A4,A6,A7,A8,A9,B1,B10,B100,B101,B103,B104,B105,B106,B107,B108,B109,B11,B110,B111,B112,B113,B117,B118,B119,B12,B121,B122,B124,B125,B126,B127,B128,B129,B13,B131,B132,B134,B135,B136,B137,B14,B140,B15,B16,B17,B18,B19,B20,B21,B22,B23,B24,B25,B26,B27,B28,B29,B3,B30,B32,B33,B34,B35,B36,B37,B38,B4,B40,B42,B43,B44,B45,B46,B47,B5,B50,B51,B52,B53,B54,B55,B58,B59,B6,B60,B61,B62,B63,B64,B65,B66,B67,B69,B7,B70,B71,B72,B73,B76,B78,B79,B80,B81,B82,B84,B86,B87,B88,B89,B9,B90,B91,B92,B93,B94,B96,B97,B98,B99,C1,C10,C11,C12,C13,C17,C18,C19,C2,C20,C21,C22,C23,C24,C26,C27,C28,C29,C3,C32,C33,C34,C35,C36,C37,C39,C4,C40,C41,C42,C43,C44,C45,C47,C48,C49,C5,C50,C51,C52,C53,C57,C58,C59,C6,C60,C61,C62,C63,C64,C65,C66,C67,C68,C69,C7,C70,C71,C72,C75,C77,C78,C79,C8,C80,C81,C83,C86,C87,D1,D10,D2,D4,D7,D8 |
Chr8:37682388 |
T |
TTA |
2bp_insertion | frameshift_variant | 207 | A1,A10,A11,A13,A14,A15,A18,A19,A2,A21,A22,A23,A24,A25,A3,A4,A6,A7,A8,A9,B1,B10,B100,B101,B103,B104,B105,B106,B108,B109,B11,B110,B111,B112,B113,B117,B118,B119,B12,B121,B122,B123,B124,B125,B126,B127,B128,B129,B13,B131,B132,B133,B134,B135,B136,B137,B14,B15,B16,B17,B18,B19,B20,B21,B22,B23,B24,B25,B26,B27,B28,B29,B3,B30,B32,B33,B34,B35,B36,B38,B4,B40,B42,B43,B44,B45,B46,B47,B5,B50,B51,B52,B53,B54,B55,B58,B59,B6,B60,B61,B62,B63,B64,B65,B66,B69,B7,B70,B71,B73,B76,B78,B79,B80,B81,B82,B84,B86,B87,B88,B89,B9,B90,B91,B92,B93,B94,B96,B97,B98,B99,C1,C10,C12,C13,C17,C18,C19,C2,C20,C21,C22,C23,C24,C26,C27,C28,C29,C3,C32,C33,C34,C35,C36,C37,C39,C4,C40,C41,C42,C43,C44,C45,C47,C48,C49,C5,C50,C52,C53,C57,C58,C59,C6,C60,C61,C62,C63,C64,C65,C66,C67,C68,C69,C7,C70,C71,C72,C75,C77,C78,C79,C8,C80,C81,C82,C83,C85,C86,C87,D1,D10,D2,D4,D5,D7,D8 |
Chr8:37682464 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B137,B87 |
Chr8:37682477 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C35 |
Chr8:37682540 |
C |
CCA |
2bp_insertion | frameshift_variant | 231 | A1,A10,A11,A13,A14,A15,A16,A18,A19,A2,A20,A24,A25,A3,A4,A6,A7,A8,A9,B1,B10,B100,B101,B102,B103,B104,B105,B106,B107,B108,B11,B110,B112,B113,B114,B115,B117,B118,B119,B12,B120,B121,B122,B123,B124,B125,B126,B127,B129,B13,B131,B132,B133,B134,B135,B136,B138,B139,B14,B16,B17,B19,B2,B20,B21,B22,B23,B24,B25,B26,B27,B28,B29,B3,B30,B32,B33,B34,B35,B36,B37,B38,B39,B4,B40,B41,B42,B43,B44,B45,B46,B47,B48,B49,B5,B50,B51,B52,B53,B55,B56,B57,B58,B59,B6,B60,B61,B62,B63,B64,B65,B66,B67,B68,B69,B7,B70,B71,B72,B74,B75,B76,B77,B78,B79,B8,B80,B81,B82,B83,B84,B86,B88,B89,B9,B90,B91,B92,B93,B94,B95,B97,B98,B99,C1,C11,C12,C13,C14,C15,C16,C17,C18,C19,C2,C20,C21,C22,C23,C24,C25,C26,C27,C28,C3,C31,C32,C33,C35,C36,C37,C38,C39,C4,C40,C41,C42,C44,C45,C46,C47,C48,C49,C50,C51,C52,C53,C54,C55,C56,C57,C58,C59,C6,C60,C61,C62,C63,C64,C65,C66,C67,C68,C69,C7,C70,C71,C72,C74,C77,C78,C79,C8,C80,C81,C82,C84,C85,C86,C87,C9,D1,D10,D11,D2,D3,D4,D5,D7,D8,D9 |
Chr8:37682545 |
TCA |
T |
2bp_deletion | frameshift_variant | 231 | A1,A10,A11,A13,A14,A15,A16,A18,A19,A2,A20,A24,A25,A3,A4,A5,A6,A7,A8,A9,B1,B10,B100,B101,B102,B103,B104,B105,B106,B107,B108,B11,B110,B112,B113,B114,B115,B117,B118,B119,B12,B120,B121,B122,B123,B124,B125,B126,B127,B129,B13,B130,B131,B132,B133,B134,B135,B136,B138,B139,B14,B16,B17,B19,B2,B20,B21,B22,B23,B24,B25,B26,B27,B28,B29,B3,B30,B32,B33,B34,B35,B36,B37,B38,B39,B4,B40,B41,B42,B43,B44,B45,B46,B47,B48,B49,B5,B50,B51,B52,B53,B55,B56,B57,B58,B59,B6,B60,B61,B62,B63,B64,B65,B66,B67,B68,B69,B7,B70,B71,B72,B74,B76,B77,B78,B79,B8,B80,B81,B82,B83,B84,B86,B88,B89,B9,B90,B91,B92,B93,B94,B95,B97,B98,B99,C1,C11,C12,C13,C14,C15,C16,C17,C18,C19,C2,C20,C21,C22,C23,C24,C25,C27,C28,C3,C31,C32,C33,C35,C36,C37,C38,C39,C4,C40,C41,C42,C44,C45,C46,C47,C48,C49,C50,C51,C52,C53,C54,C55,C56,C57,C58,C59,C6,C60,C61,C62,C63,C64,C65,C66,C67,C68,C69,C7,C70,C71,C72,C74,C77,C78,C79,C8,C80,C81,C82,C84,C85,C86,C87,C9,D1,D10,D11,D2,D3,D4,D5,D7,D8,D9 |
Chr8:37682554 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C17 |
Chr8:37682661 |
AGT |
A |
2bp_deletion | frameshift_variant | 178 | A1,A10,A13,A14,A15,A19,A2,A21,A25,A3,A5,A7,A8,B1,B10,B100,B101,B102,B103,B104,B105,B108,B11,B110,B112,B113,B114,B118,B119,B12,B120,B122,B123,B124,B125,B127,B131,B132,B133,B134,B135,B136,B14,B140,B15,B16,B17,B18,B19,B2,B21,B22,B23,B24,B27,B28,B29,B3,B30,B32,B35,B36,B37,B38,B39,B4,B40,B41,B42,B43,B44,B45,B47,B48,B5,B50,B51,B52,B53,B55,B56,B58,B59,B6,B60,B61,B62,B63,B64,B66,B67,B68,B69,B7,B71,B72,B74,B77,B78,B79,B8,B80,B81,B82,B83,B84,B86,B88,B89,B90,B91,B92,B93,B94,B97,B98,C10,C11,C15,C17,C20,C21,C25,C27,C28,C31,C32,C33,C35,C36,C37,C39,C4,C41,C42,C43,C46,C48,C49,C50,C52,C53,C54,C55,C58,C59,C60,C61,C64,C65,C66,C67,C68,C69,C7,C70,C71,C72,C74,C75,C77,C79,C8,C80,C81,C82,C84,C85,C86,C87,C9,D1,D10,D2,D5,D6,D7,D9 |
Chr8:37682666 |
T |
TAA |
2bp_insertion | frameshift_variant | 178 | A1,A10,A13,A14,A15,A19,A2,A21,A25,A3,A5,A7,A8,B1,B10,B100,B101,B102,B103,B104,B105,B108,B11,B110,B112,B113,B114,B115,B118,B119,B12,B120,B122,B123,B124,B125,B127,B131,B132,B133,B134,B135,B136,B14,B140,B15,B16,B17,B18,B19,B2,B21,B22,B23,B27,B28,B29,B3,B30,B32,B35,B36,B37,B38,B39,B4,B40,B41,B42,B43,B44,B45,B47,B48,B5,B50,B51,B52,B53,B55,B56,B58,B59,B6,B60,B61,B62,B63,B64,B66,B67,B68,B69,B7,B71,B72,B74,B77,B78,B79,B8,B80,B81,B82,B83,B84,B86,B88,B90,B91,B92,B93,B94,B97,B98,C10,C11,C15,C16,C17,C20,C21,C25,C27,C28,C29,C31,C32,C33,C35,C36,C37,C39,C4,C41,C42,C43,C46,C48,C49,C50,C52,C53,C54,C55,C58,C59,C60,C61,C64,C65,C66,C67,C68,C69,C7,C70,C71,C72,C74,C75,C77,C79,C8,C80,C81,C82,C84,C86,C87,C9,D1,D10,D2,D5,D6,D7,D9 |
Chr8:37682679 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C51 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057777907.1PF00091
Tubulin 114-275 aa
PF12327
FtsZ_C 325-419 aa
XP_057777908.1PF00091
Tubulin 114-275 aa
PF12327
FtsZ_C 325-419 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057777907.1 |
Pfam | PF00091 |
Tubulin | Domain | 114 | 275 | 3.4e-47 | 161.9 | Tubulin/FtsZ family, GTPase domain |
XP_057777907.1 |
Pfam | PF12327 |
FtsZ_C | Domain | 325 | 419 | 2.6e-30 | 105.3 | FtsZ family, C-terminal domain |
XP_057777908.1 |
Pfam | PF00091 |
Tubulin | Domain | 114 | 275 | 3.4e-47 | 161.9 | Tubulin/FtsZ family, GTPase domain |
XP_057777908.1 |
Pfam | PF12327 |
FtsZ_C | Domain | 325 | 419 | 2.6e-30 | 105.3 | FtsZ family, C-terminal domain |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
2 records
下载 cDNA FASTA2 records
下载 CDS FASTA2 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。