当前解析结果
SmilChr08G003532| 统一新 Gene ID | SmilChr08G003532 |
|---|---|
| 名称 | SmilChr08G003532 |
| 描述 | uncharacterized SmilChr08G003532 |
| 染色体 / SeqID | Chr08 / NC_080394.1 |
| 坐标与链方向 | 37942932 - 37946606 / + |
| NCBI Gene ID | LOC130996649 |
|---|---|
| GeneID | 130996649 |
| locus_tag | - |
| NCBI Name | LOC130996649 |
| 原始查询 | SmilChr08G003532 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | Thioredoxin family protein [Source:NCBI gene (formerly Entrezgene);Acc:831679]; symbol=AT5G03880; hit=AT5G03880; species=arabidopsis; confidence=high |
| 产物 | Thioredoxin family protein [Source:NCBI gene (formerly Entrezgene);Acc:831679]; symbol=AT5G03880; hit=AT5G03880; species=arabidopsis; confidence=high |
| Arabidopsis | AT5G03880 (AT5G03880)Thioredoxin family protein [Source:NCBI gene (formerly Entrezgene);Acc:831679] identity=73.6; qcov=0.785; evalue=1.26e-123; confidence=high |
| Rice | Os08g0558200 (OsGRX20)- identity=70.5; qcov=0.785; evalue=1.63e-116; confidence=high |
| GO | GO:0009507 (chloroplast) |
| KEGG | - |
| Pfam | PF13409 (GST_N_2); PF13417 (GST_N_3) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130996649 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Chloroplast | 叶绿体 | 1.00000 | XP_057777925.1 |
| 2 | Chloroplast thylakoid | 类囊体 | 1.00000 | XP_057777926.1 |
| 3 | Chloroplast stroma | 叶绿体基质 | 0.40000 | XP_057777925.1 |
| 4 | Chloroplast thylakoid membrane | 类囊体膜 | 0.40000 | XP_057777928.1 |
| 5 | Chloroplast membrane | 叶绿体膜 | 0.20000 | XP_057777925.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr8:37943255 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B6 |
Chr8:37943368 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B62,B91,C14 |
Chr8:37943801 |
GGT |
G |
2bp_deletion | frameshift_variant | 18 | B129,B26,B38,B39,B42,B52,B59,B74,C21,C23,C26,C36,C39,C5,C60,C73,C81,C84 |
Chr8:37943804 |
A |
ACT |
2bp_insertion | frameshift_variant | 17 | B129,B38,B39,B42,B52,B59,B74,C21,C23,C26,C36,C39,C5,C60,C73,C81,C84 |
Chr8:37943824 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B26 |
Chr8:37944994 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B80 |
Chr8:37945297 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B131,C41 |
Chr8:37945318 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B4 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057777925.1PF13417
GST_N_3 128-202 aa
PF13409
GST_N_2 133-197 aa
PF13417
GST_N_3 249-332 aa
XP_057777926.1PF13417
GST_N_3 128-202 aa
PF13409
GST_N_2 133-197 aa
PF13417
GST_N_3 249-324 aa
XP_057777927.1PF13417
GST_N_3 128-202 aa
PF13409
GST_N_2 133-197 aa
PF13417
GST_N_3 249-320 aa
PF13409
GST_N_2 251-317 aa
XP_057777928.1PF13417
GST_N_3 128-202 aa
PF13409
GST_N_2 133-197 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057777925.1 |
Pfam | PF13417 |
GST_N_3 | Domain | 128 | 202 | 8.5e-28 | 97.2 | Glutathione S-transferase, N-terminal domain |
XP_057777925.1 |
Pfam | PF13409 |
GST_N_2 | Domain | 133 | 197 | 2.3e-14 | 54.5 | Glutathione S-transferase, N-terminal domain |
XP_057777925.1 |
Pfam | PF13417 |
GST_N_3 | Domain | 249 | 332 | 8.5e-28 | 97.2 | Glutathione S-transferase, N-terminal domain |
XP_057777926.1 |
Pfam | PF13417 |
GST_N_3 | Domain | 128 | 202 | 1.3e-28 | 99.9 | Glutathione S-transferase, N-terminal domain |
XP_057777926.1 |
Pfam | PF13409 |
GST_N_2 | Domain | 133 | 197 | 2.9e-15 | 57.3 | Glutathione S-transferase, N-terminal domain |
XP_057777926.1 |
Pfam | PF13417 |
GST_N_3 | Domain | 249 | 324 | 1.3e-28 | 99.9 | Glutathione S-transferase, N-terminal domain |
XP_057777927.1 |
Pfam | PF13417 |
GST_N_3 | Domain | 128 | 202 | 1.8e-30 | 105.8 | Glutathione S-transferase, N-terminal domain |
XP_057777927.1 |
Pfam | PF13409 |
GST_N_2 | Domain | 133 | 197 | 8.3e-16 | 59.1 | Glutathione S-transferase, N-terminal domain |
XP_057777927.1 |
Pfam | PF13417 |
GST_N_3 | Domain | 249 | 320 | 1.8e-30 | 105.8 | Glutathione S-transferase, N-terminal domain |
XP_057777927.1 |
Pfam | PF13409 |
GST_N_2 | Domain | 251 | 317 | 8.3e-16 | 59.1 | Glutathione S-transferase, N-terminal domain |
XP_057777928.1 |
Pfam | PF13417 |
GST_N_3 | Domain | 128 | 202 | 2.6e-20 | 73.3 | Glutathione S-transferase, N-terminal domain |
XP_057777928.1 |
Pfam | PF13409 |
GST_N_2 | Domain | 133 | 197 | 9.5e-10 | 39.7 | Glutathione S-transferase, N-terminal domain |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
4 records
下载 cDNA FASTA4 records
下载 CDS FASTA4 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。