Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID,以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因,再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。
示例

当前解析结果

SmilChr08G003544

染色体: Chr08 坐标: 38079500-38080226 链方向: - 类型: protein_coding

基本信息

统一新 Gene IDSmilChr08G003544
名称SmilChr08G003544
描述uncharacterized SmilChr08G003544
染色体 / SeqIDChr08 / NC_080394.1
坐标与链方向38079500 - 38080226 / -

ID 对照

NCBI Gene IDLOC130996657
GeneID130996657
locus_tag-
NCBI NameLOC130996657
原始查询SmilChr08G003544

查看完整 ID 对照表

功能注释

来源GFF basic annotation; Arabidopsis/Rice homolog
描述uncharacterized protein [Source:NCBI gene (formerly Entrezgene);Acc:824428]; symbol=AT3G52620; hit=AT3G52620; species=arabidopsis; confidence=low
产物uncharacterized protein [Source:NCBI gene (formerly Entrezgene);Acc:824428]; symbol=AT3G52620; hit=AT3G52620; species=arabidopsis; confidence=low
ArabidopsisAT3G52620 (AT3G52620)
uncharacterized protein [Source:NCBI gene (formerly Entrezgene);Acc:824428]
identity=45.6; qcov=1.01; evalue=6.24e-07; confidence=low
Rice-
-
GO-
KEGG-
Pfam-
InterPro-
eggNOG-
NRGeneID:130996657

打开注释模块

亚细胞定位 Top 5

Rank定位位置中文ScoreProtein ID
1 Mitochondrion 线粒体 1.00000 XP_057777937.1
2 Mitochondrion membrane 线粒体膜 1.00000 XP_057777937.1
3 Mitochondrion outer membrane 线粒体外膜 1.00000 XP_057777937.1
4 Nucleus 细胞核 0.00000 XP_057777937.1
5 Chromosome 染色体 0.00000 XP_057777937.1

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。

位置 REF ALT 类型 影响 携带材料数 材料
Chr8:38079723 G A EMS_canonical_SNV CDS_variant 3 B131,C41,C83
Chr8:38079726 G A EMS_canonical_SNV CDS_variant 1 C59
Chr8:38079737 C T EMS_canonical_SNV CDS_variant 1 B123
Chr8:38079765 C T EMS_canonical_SNV CDS_variant 1 B4
Chr8:38079914 G A EMS_canonical_SNV CDS_variant 5 A16,B134,B2,B74,D7
Chr8:38079918 C T EMS_canonical_SNV CDS_variant 5 B108,B111,B127,C43,C62
Chr8:38079919 C T EMS_canonical_SNV CDS_variant 2 B133,C65
Chr8:38079937 G A EMS_canonical_SNV CDS_variant 4 B108,B56,B96,D4
Chr8:38080135 G A EMS_canonical_SNV CDS_variant 1 C59

进入 EMS 突变库

预测功能结构域

当前发布数据中,此基因没有可展示的 Pfam 结构域命中。

进入结构域查询

cDNA / CDS / Protein 序列

下载基因组 DNA(仅基因区域)

每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA
XM_057921954.1
CCATACATATCTCTCCCAAATTTGATACTCACACACTTAACTGAAACCAAGAAATAATTAATCAGAATGACAAGTTCCGGGGAACCATTTCCGGCAGCTGATCTAGAGAAAGAGTTACATCCGGGCAGCAACAAGGAGTTCGAGGTCGATTCCGTTTCGTCCGCCGTCGATGCCAACAAACAAATCAAGCGTTTGGATCCGGATTATGATCAGTCTGGCCCCGTTACACCGTCTTACATGCAAGAGCAACGAGATGTGGT...
XM_057921955.1
ATATCTCTCCCAAATTTGATACTCACACACTTAACTGAAACCAAGAAATAATTAATCAGAATGACAAGTTCCGGGGAACCATTTCCGGCAGCTGATCTAGAGAAAGAGTTACATCCGGGCAGCAACAAGGAGTTCGAGGTCGATTCCGTTTCGTCCGCCGTCGATGCCAACAAACAAATCAAGCAAGAGCAACGAGATGTGGTTGAGAGGAAAGAACAGGAAAGGAAGGATGCGCTGCAGAGTTTTAAGAAGGCCATCAT...

CDS

2 records

下载 CDS FASTA
LOC130996657
ATGACAAGTTCCGGGGAACCATTTCCGGCAGCTGATCTAGAGAAAGAGTTACATCCGGGCAGCAACAAGGAGTTCGAGGTCGATTCCGTTTCGTCCGCCGTCGATGCCAACAAACAAATCAAGCAAGAGCAACGAGATGTGGTTGAGAGGAAAGAACAGGAAAGGAAGGATGCGCTGCAGAGTTTTAAGAAGGCCATCATCGTTTCTGGGATCACCGTCGCCGTCGTCGGCGCACTCTTCGCCATAACTAAGAAAATCAG...
LOC130996657
ATGACAAGTTCCGGGGAACCATTTCCGGCAGCTGATCTAGAGAAAGAGTTACATCCGGGCAGCAACAAGGAGTTCGAGGTCGATTCCGTTTCGTCCGCCGTCGATGCCAACAAACAAATCAAGCGTTTGGATCCGGATTATGATCAGTCTGGCCCCGTTACACCGTCTTACATGCAAGAGCAACGAGATGTGGTTGAGAGGAAAGAACAGGAAAGGAAGGATGCGCTGCAGAGTTTTAAGAAGGCCATCATCGTTTCTGG...

Protein

2 records

下载 Protein FASTA
XP_057777937.1
MTSSGEPFPAADLEKELHPGSNKEFEVDSVSSAVDANKQIKRLDPDYDQSGPVTPSYMQEQRDVVERKEQERKDALQSFKKAIIVSGITVAVVGALFAITKKIREK
XP_057777938.1
MTSSGEPFPAADLEKELHPGSNKEFEVDSVSSAVDANKQIKQEQRDVVERKEQERKDALQSFKKAIIVSGITVAVVGALFAITKKIREK

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

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