当前解析结果
SmilChr08G003558| 统一新 Gene ID | SmilChr08G003558 |
|---|---|
| 名称 | SmilChr08G003558 |
| 描述 | uncharacterized SmilChr08G003558 |
| 染色体 / SeqID | Chr08 / NC_080394.1 |
| 坐标与链方向 | 38258781 - 38262219 / - |
| NCBI Gene ID | LOC130996670 |
|---|---|
| GeneID | 130996670 |
| locus_tag | - |
| NCBI Name | LOC130996670 |
| 原始查询 | SmilChr08G003558 |
| 来源 | GFF basic annotation; Arabidopsis/Rice homolog |
|---|---|
| 描述 | GATA zinc finger protein [Source:NCBI gene (formerly Entrezgene);Acc:824427]; symbol=AT3G52610; hit=AT3G52610; species=arabidopsis; confidence=high |
| 产物 | GATA zinc finger protein [Source:NCBI gene (formerly Entrezgene);Acc:824427]; symbol=AT3G52610; hit=AT3G52610; species=arabidopsis; confidence=high |
| Arabidopsis | AT3G52610 (AT3G52610)GATA zinc finger protein [Source:NCBI gene (formerly Entrezgene);Acc:824427] identity=46.5; qcov=0.992; evalue=6.69e-128; confidence=high |
| Rice | Os01g0861900- identity=36.5; qcov=0.983; evalue=1.21e-88; confidence=medium |
| GO | - |
| KEGG | - |
| Pfam | - |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130996670 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytoplasm | 细胞质 | 0.60000 | XP_057777951.1 |
| 2 | Cytosol | 细胞质基质 | 0.40000 | XP_057777951.1 |
| 3 | Nucleus | 细胞核 | 0.20000 | XP_057777951.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057777951.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057777951.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr8:38259185 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B25,C24 |
Chr8:38259192 |
T |
TC |
1bp_insertion | frameshift_variant | 3 | B12,B25,C24 |
Chr8:38259192 |
T |
TC |
1bp_insertion | CDS_variant | 3 | B12,B25,C24 |
Chr8:38259332 |
TC |
T |
1bp_deletion | frameshift_variant | 43 | A11,A16,A3,A5,A8,B107,B108,B113,B135,B140,B17,B18,B19,B21,B27,B37,B47,B48,B52,B64,B73,B80,B9,B94,B98,C1,C11,C15,C17,C21,C28,C4,C55,C63,C64,C65,C67,C76,C77,C78,C82,C9,D7 |
Chr8:38259334 |
A |
AT |
1bp_insertion | frameshift_variant | 117 | A13,A21,A22,A23,A3,A6,A7,A9,B1,B101,B102,B104,B109,B11,B110,B111,B112,B114,B118,B12,B120,B122,B124,B128,B129,B130,B134,B137,B138,B16,B22,B24,B33,B39,B4,B42,B43,B44,B46,B49,B5,B50,B53,B55,B56,B59,B6,B61,B62,B66,B68,B70,B71,B74,B75,B76,B77,B78,B79,B8,B82,B83,B85,B87,B89,B92,B97,B98,B99,C10,C13,C18,C19,C20,C23,C25,C26,C27,C29,C3,C30,C32,C33,C35,C36,C37,C38,C40,C41,C42,C43,C47,C48,C5,C53,C56,C57,C59,C60,C62,C64,C7,C70,C71,C72,C74,C79,C8,C83,C84,C87,D1,D11,D4,D6,D8,D9 |
Chr8:38259336 |
GT |
G |
1bp_deletion | frameshift_variant | 93 | A13,A22,A3,A8,B1,B101,B104,B107,B109,B11,B111,B112,B12,B120,B122,B124,B130,B134,B137,B138,B17,B22,B39,B4,B42,B43,B46,B49,B5,B52,B53,B55,B56,B59,B61,B62,B66,B68,B70,B71,B75,B76,B77,B79,B8,B82,B83,B87,B89,B92,B97,B98,B99,C13,C18,C19,C20,C25,C27,C29,C3,C32,C35,C36,C37,C38,C40,C41,C42,C43,C47,C48,C5,C55,C56,C57,C59,C60,C62,C64,C70,C71,C79,C8,C82,C83,C84,C87,D1,D11,D4,D6,D8 |
Chr8:38259353 |
C |
CA |
1bp_insertion | frameshift_variant | 104 | A11,A13,A22,A3,A8,B1,B101,B107,B109,B11,B111,B112,B113,B12,B120,B122,B124,B128,B130,B134,B135,B137,B138,B140,B17,B21,B22,B37,B39,B42,B43,B44,B47,B49,B5,B52,B53,B55,B56,B59,B61,B62,B64,B66,B68,B70,B71,B73,B75,B76,B77,B8,B80,B82,B83,B87,B92,B94,B97,B98,B99,C11,C13,C15,C17,C18,C19,C20,C21,C25,C27,C29,C3,C32,C36,C37,C4,C40,C41,C42,C43,C47,C48,C5,C55,C56,C57,C59,C60,C62,C64,C67,C70,C71,C79,C82,C83,C84,C87,D1,D11,D4,D6,D8 |
Chr8:38259354 |
T |
TG |
1bp_insertion | frameshift_variant | 104 | A11,A13,A22,A3,A8,B1,B101,B107,B109,B11,B111,B112,B113,B12,B120,B122,B124,B128,B130,B134,B135,B137,B138,B140,B17,B21,B22,B37,B39,B42,B43,B44,B47,B49,B5,B52,B53,B55,B56,B59,B61,B62,B64,B66,B68,B70,B71,B73,B75,B76,B77,B8,B80,B82,B83,B87,B92,B94,B97,B98,B99,C11,C13,C15,C17,C18,C19,C20,C21,C25,C27,C29,C3,C32,C36,C37,C4,C40,C41,C42,C43,C47,C48,C5,C55,C56,C57,C59,C60,C62,C64,C67,C70,C71,C79,C82,C83,C84,C87,D1,D11,D4,D6,D8 |
Chr8:38259357 |
T |
TTG |
2bp_insertion | frameshift_variant | 102 | A11,A13,A22,A3,A8,B1,B101,B107,B109,B11,B111,B112,B113,B12,B120,B122,B124,B128,B130,B134,B135,B137,B138,B17,B21,B22,B37,B39,B42,B43,B44,B47,B49,B5,B52,B53,B55,B56,B59,B61,B62,B64,B66,B68,B70,B73,B75,B76,B77,B8,B80,B82,B83,B87,B92,B94,B97,B98,B99,C11,C13,C15,C17,C18,C19,C20,C21,C25,C27,C29,C3,C32,C36,C37,C4,C40,C41,C42,C43,C47,C48,C5,C55,C56,C57,C59,C60,C62,C64,C67,C70,C71,C79,C82,C83,C84,C87,D1,D11,D4,D6,D8 |
Chr8:38259371 |
C |
CAT |
2bp_insertion | frameshift_variant | 80 | A11,A3,A8,B107,B109,B111,B113,B12,B122,B124,B128,B130,B134,B135,B137,B138,B17,B21,B22,B37,B39,B42,B43,B47,B5,B52,B53,B55,B59,B62,B64,B66,B68,B70,B73,B75,B76,B77,B80,B82,B83,B87,B92,B94,B97,B98,B99,C13,C15,C17,C18,C19,C25,C27,C32,C36,C37,C4,C40,C42,C43,C5,C55,C56,C57,C59,C60,C62,C64,C70,C71,C79,C82,C84,C87,D1,D11,D4,D6,D8 |
Chr8:38259374 |
A |
AC |
1bp_insertion | frameshift_variant | 14 | A13,B101,B107,B11,B112,B120,B56,B61,B74,B8,C29,C41,C47,C48 |
Chr8:38259376 |
T |
TC |
1bp_insertion | frameshift_variant | 71 | A3,A8,B107,B109,B111,B113,B12,B122,B124,B128,B130,B134,B137,B138,B17,B21,B22,B37,B39,B42,B43,B47,B5,B52,B53,B55,B62,B64,B66,B68,B70,B73,B75,B76,B77,B80,B82,B87,B92,B97,B98,B99,C13,C17,C18,C19,C25,C27,C36,C37,C4,C42,C43,C5,C55,C57,C59,C60,C62,C64,C67,C70,C71,C79,C82,C84,C87,D11,D4,D6,D8 |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。