当前解析结果
SmilChr08G003572| 统一新 Gene ID | SmilChr08G003572 |
|---|---|
| 名称 | SmilChr08G003572 |
| 描述 | uncharacterized SmilChr08G003572 |
| 染色体 / SeqID | Chr08 / NC_080394.1 |
| 坐标与链方向 | 38464554 - 38465865 / - |
| NCBI Gene ID | LOC130996684 |
|---|---|
| GeneID | 130996684 |
| locus_tag | - |
| NCBI Name | LOC130996684 |
| 原始查询 | SmilChr08G003572 |
| 来源 | GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | coiled-coil protein (DUF572) [Source:NCBI gene (formerly Entrezgene);Acc:838283]; symbol=AT1G17130; hit=AT1G17130; species=arabidopsis; confidence=high |
| 产物 | coiled-coil protein (DUF572) [Source:NCBI gene (formerly Entrezgene);Acc:838283]; symbol=AT1G17130; hit=AT1G17130; species=arabidopsis; confidence=high |
| Arabidopsis | AT1G17130 (AT1G17130)coiled-coil protein (DUF572) [Source:NCBI gene (formerly Entrezgene);Acc:838283] identity=63.6; qcov=1.01; evalue=1.04e-138; confidence=high |
| Rice | Os01g0588700- identity=59.3; qcov=1.03; evalue=1.32e-123; confidence=high |
| GO | GO:0000398 (mRNA splicing, via spliceosome); GO:0071006 (U2-type catalytic step 1 spliceosome) |
| KEGG | smil03040 (Spliceosome - Salvia miltiorrhiza (redroot sage)) |
| Pfam | PF04502 (Saf4_Yju2) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130996684 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 1.00000 | XP_057777967.1 |
| 2 | Nucleoplasm | 核质 | 0.40000 | XP_057777967.1 |
| 3 | Chromosome | 染色体 | 0.00000 | XP_057777967.1 |
| 4 | Centromere | 着丝粒 | 0.00000 | XP_057777967.1 |
| 5 | Chromatin | 染色质 | 0.00000 | XP_057777967.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr8:38464796 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | A18,A21,B2,D4 |
Chr8:38464809 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | A1,B69 |
Chr8:38464820 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | A13 |
Chr8:38464846 |
TG |
T |
1bp_deletion | frameshift_variant | 8 | A16,A24,A7,B126,B139,B38,B39,B63 |
Chr8:38464853 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B26,D1 |
Chr8:38464910 |
AT |
* |
1bp_deletion | CDS_variant | 5 | B5,B65,B77,C4,C49 |
Chr8:38465019 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | A1,B111,B69,B90,B92 |
Chr8:38465027 |
AGG |
A |
2bp_deletion | frameshift_variant | 5 | A1,B111,B69,B90,B92 |
Chr8:38465027 |
AGG |
A |
2bp_deletion | CDS_variant | 5 | A1,B111,B69,B90,B92 |
Chr8:38465108 |
C |
CT |
1bp_insertion | frameshift_variant | 89 | A1,A16,A22,A24,A7,A8,B10,B108,B115,B120,B121,B122,B124,B126,B127,B13,B130,B138,B139,B14,B140,B19,B2,B21,B27,B3,B30,B38,B39,B4,B46,B47,B51,B52,B56,B57,B58,B6,B63,B67,B7,B70,B72,B73,B74,B75,B76,B77,B82,B88,B89,B90,B91,B92,B98,C15,C16,C18,C19,C21,C23,C24,C29,C3,C31,C32,C33,C34,C4,C45,C46,C50,C54,C55,C56,C57,C63,C65,C67,C68,C69,C70,C71,C82,C85,C87,D10,D2,D4 |
Chr8:38465143 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B101 |
Chr8:38465155 |
C |
CTA |
2bp_insertion | frameshift_variant | 7 | B13,B32,C2,C48,C5,C68,C82 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057777967.1PF04502
Saf4_Yju2 9-337 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057777967.1 |
Pfam | PF04502 |
Saf4_Yju2 | Family | 9 | 337 | 1.2e-98 | 331.6 | Saf4/Yju2 protein |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。