当前解析结果
SmilChr08G003596| 统一新 Gene ID | SmilChr08G003596 |
|---|---|
| 名称 | SmilChr08G003596 |
| 描述 | uncharacterized SmilChr08G003596 |
| 染色体 / SeqID | Chr08 / NC_080394.1 |
| 坐标与链方向 | 38965863 - 38980058 / + |
| NCBI Gene ID | LOC130996699 |
|---|---|
| GeneID | 130996699 |
| locus_tag | - |
| NCBI Name | LOC130996699 |
| 原始查询 | SmilChr08G003596 |
| 来源 | GFF basic annotation; NCBI GO GAF; Arabidopsis/Rice homolog |
|---|---|
| 描述 | LETM1-like protein [Source:NCBI gene (formerly Entrezgene);Acc:820329]; symbol=AT3G11560; hit=AT3G11560; species=arabidopsis; confidence=high |
| 产物 | LETM1-like protein [Source:NCBI gene (formerly Entrezgene);Acc:820329]; symbol=AT3G11560; hit=AT3G11560; species=arabidopsis; confidence=high |
| Arabidopsis | AT3G11560 (AT3G11560)LETM1-like protein [Source:NCBI gene (formerly Entrezgene);Acc:820329] identity=58.8; qcov=0.948; evalue=0; confidence=high |
| Rice | Os08g0482100- identity=55.4; qcov=0.927; evalue=0; confidence=high |
| GO | GO:0005743 (mitochondrial inner membrane); GO:0030003 (intracellular monoatomic cation homeostasis) |
| KEGG | - |
| Pfam | - |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130996699 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Chloroplast | 叶绿体 | 1.00000 | XP_057777982.1 |
| 2 | Chloroplast membrane | 叶绿体膜 | 1.00000 | XP_057777982.1 |
| 3 | Chloroplast stroma | 叶绿体基质 | 0.40000 | XP_057777987.1 |
| 4 | Nucleus | 细胞核 | 0.20000 | XP_057777987.1 |
| 5 | Chromosome | 染色体 | 0.00000 | XP_057777982.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr8:38969007 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | A19 |
Chr8:38969167 |
GC |
G |
1bp_deletion | frameshift_variant | 1 | B122 |
Chr8:38969167 |
GC |
G |
1bp_deletion | CDS_variant | 1 | B122 |
Chr8:38969316 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C36 |
Chr8:38970070 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | A18,B12,B24 |
Chr8:38970127 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B123 |
Chr8:38970499 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B123 |
Chr8:38970613 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B44 |
Chr8:38971764 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C7 |
Chr8:38976251 |
C |
T |
EMS_canonical_SNV | stop_gained | 18 | A7,B119,B126,B23,B42,B43,B5,B79,B81,B9,B93,C19,C35,C45,C47,C77,C85,D8 |
Chr8:38976322 |
C |
T |
EMS_canonical_SNV | stop_gained | 1 | C16 |
Chr8:38976322 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C16 |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
6 records
下载 cDNA FASTA6 records
下载 CDS FASTA6 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。