Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID,以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因,再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。
示例

当前解析结果

SmilChr08G003596

染色体: Chr08 坐标: 38965863-38980058 链方向: + 类型: protein_coding

基本信息

统一新 Gene IDSmilChr08G003596
名称SmilChr08G003596
描述uncharacterized SmilChr08G003596
染色体 / SeqIDChr08 / NC_080394.1
坐标与链方向38965863 - 38980058 / +

ID 对照

NCBI Gene IDLOC130996699
GeneID130996699
locus_tag-
NCBI NameLOC130996699
原始查询SmilChr08G003596

查看完整 ID 对照表

功能注释

来源GFF basic annotation; NCBI GO GAF; Arabidopsis/Rice homolog
描述LETM1-like protein [Source:NCBI gene (formerly Entrezgene);Acc:820329]; symbol=AT3G11560; hit=AT3G11560; species=arabidopsis; confidence=high
产物LETM1-like protein [Source:NCBI gene (formerly Entrezgene);Acc:820329]; symbol=AT3G11560; hit=AT3G11560; species=arabidopsis; confidence=high
ArabidopsisAT3G11560 (AT3G11560)
LETM1-like protein [Source:NCBI gene (formerly Entrezgene);Acc:820329]
identity=58.8; qcov=0.948; evalue=0; confidence=high
RiceOs08g0482100
-
identity=55.4; qcov=0.927; evalue=0; confidence=high
GOGO:0005743 (mitochondrial inner membrane); GO:0030003 (intracellular monoatomic cation homeostasis)
KEGG-
Pfam-
InterPro-
eggNOG-
NRGeneID:130996699

打开注释模块

亚细胞定位 Top 5

Rank定位位置中文ScoreProtein ID
1 Chloroplast 叶绿体 1.00000 XP_057777982.1
2 Chloroplast membrane 叶绿体膜 1.00000 XP_057777982.1
3 Chloroplast stroma 叶绿体基质 0.40000 XP_057777987.1
4 Nucleus 细胞核 0.20000 XP_057777987.1
5 Chromosome 染色体 0.00000 XP_057777982.1

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。

位置 REF ALT 类型 影响 携带材料数 材料
Chr8:38969007 G A EMS_canonical_SNV CDS_variant 1 A19
Chr8:38969167 GC G 1bp_deletion frameshift_variant 1 B122
Chr8:38969167 GC G 1bp_deletion CDS_variant 1 B122
Chr8:38969316 C T EMS_canonical_SNV CDS_variant 1 C36
Chr8:38970070 C T EMS_canonical_SNV CDS_variant 3 A18,B12,B24
Chr8:38970127 C T EMS_canonical_SNV CDS_variant 1 B123
Chr8:38970499 C T EMS_canonical_SNV CDS_variant 1 B123
Chr8:38970613 G A EMS_canonical_SNV CDS_variant 1 B44
Chr8:38971764 G A EMS_canonical_SNV CDS_variant 1 C7
Chr8:38976251 C T EMS_canonical_SNV stop_gained 18 A7,B119,B126,B23,B42,B43,B5,B79,B81,B9,B93,C19,C35,C45,C47,C77,C85,D8
Chr8:38976322 C T EMS_canonical_SNV stop_gained 1 C16
Chr8:38976322 C T EMS_canonical_SNV CDS_variant 1 C16

进入 EMS 突变库

预测功能结构域

当前发布数据中,此基因没有可展示的 Pfam 结构域命中。

进入结构域查询

cDNA / CDS / Protein 序列

下载基因组 DNA(仅基因区域)

每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

6 records

下载 cDNA FASTA
XM_057921999.1
AATTATAGTTGAAAAATATTTATAAAATAATTGTTGCATATGAGATTATAAAAAAATAAGTTGGGATAGAGGAACTTATTTTTTTGGGAGCTTATAAGCTCTTGGAGCTTAAATTTGGAGCTTATAAGCTGTTTAAGAACTTATTTTGCCAAACACTTTGAAGGAGCTTATAAGCTCCTAAACAACTTATAAGCCCCCCCACATTACTCTTTATAGTCCCCTATTTAAAAATAAAAATAAAAATATTAATAAAATTACAA...
XM_057922001.1
ATATGTGATGAATTGGTTCCCCACGTCTACGGATAGAGGGTGGGGGATCTCTTTAGGCCACATCAGCAACGCTGCTCAATCCTGTTATGTCTTTCCACGCGCGCAACCATAGCCTCGTCTCCTCTAGCTCTTCAACTCCACGGTCTCCAGTTAAACCAATCAAAGCCTATTTCTTTAGCAGAAAAATCATTGGCCTTGATCATCTGATATTTAATGATTATTATACAAGGAAGAAAGGCCGTGTAAGAATATCCGATTTA...

CDS

6 records

下载 CDS FASTA
LOC130996699
ATGTCTTTCCACGCGCGCAACCATAGCCTCGTCTCCTCTAGCTCTTCAACTCCACGGTCTCCAGTTAAACCAATCAAAGCCTATTTCTTTAGCAGAAAAATCATTGGCCTTGATCATCTGATATTTAATGATTATTATACAAGGAAGAAAGGCCGTGTAAGAATATCCGATTTAGAAAATGGTAAACTTAGTGTTAGCTACAGGTTCTCAGATTCACAAAAGCAATCCATCATCCTTTGCAAATTGAGGAGGCTAGATCG...
LOC130996699
ATGTCTTTCCACGCGCGCAACCATAGCCTCGTCTCCTCTAGCTCTTCAACTCCACGGTCTCCAGTTAAACCAATCAAAGCCTATTTCTTTAGCAGAAAAATCATTGGCCTTGATCATCTGATATTTAATGATTATTATACAAGGAAGAAAGGCCGTGTAAGAATATCCGATTTAGAAAATGGTAAACTTAGTGTTAGCTACAGGTTCTCAGATTCACAAAAGCAATCCATCATCCTTTGCAAATTGAGGAGGCTAGATCG...

Protein

6 records

下载 Protein FASTA
XP_057777982.1
MSFHARNHSLVSSSSSTPRSPVKPIKAYFFSRKIIGLDHLIFNDYYTRKKGRVRISDLENGKLSVSYRFSDSQKQSIILCKLRRLDRLRPLASADDGVTVNGSSQSRTNSDMEEIRYKLNQSLQDEDYNTGLVQLLHDAARVFELAIKEQSSLSKISWFSTAWLGVDKNVWVKELAYQASVFSLLQAASEISSRGDGRDRDINVFVQRSLSKQSSPLESVIRDKLLAKQPGAYDWFWSEQIPAAVTSFVNYFEKEQRFAP...
XP_057777983.1
MSFHARNHSLVSSSSSTPRSPVKPIKAYFFSRKIIGLDHLIFNDYYTRKKGRVRISDLENGKLSVSYRFSDSQKQSIILCKLRRLDRLRPLASADDGVTVNGSSQSRTNSDMEEIRYKLNQSLQDEDYNTGLVQLLHDAARVFELAIKEQSSLSKISWFSTAWLGVDKNVWVKELAYQASVFSLLQAASEISSRGDGRDRDINVFVQRSLSKQSSPLESVIRDKLLAKQPGAYDWFWSEQIPAAVTSFVNYFEKEQRFAP...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。

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