当前解析结果
SmilChr08G003635| 统一新 Gene ID | SmilChr08G003635 |
|---|---|
| 名称 | SmilChr08G003635 |
| 描述 | secreted RxLR effector protein 161-like |
| 染色体 / SeqID | Chr08 / NC_080394.1 |
| 坐标与链方向 | 39676115 - 39676858 / + |
| NCBI Gene ID | LOC130998465 |
|---|---|
| GeneID | 130998465 |
| locus_tag | - |
| NCBI Name | LOC130998465 |
| 原始查询 | SmilChr08G003635 |
| 来源 | GFF basic annotation; Arabidopsis/Rice homolog |
|---|---|
| 描述 | secreted RxLR effector protein 161-like |
| 产物 | secreted RxLR effector protein 161-like |
| Arabidopsis | AT4G23160 (CRK8)cysteine-rich RECEPTOR-like kinase [Source:NCBI gene (formerly Entrezgene);Acc:828415] identity=35.4; qcov=0.802; evalue=3.71e-37; confidence=medium |
| Rice | Os11g0656500- identity=40.3; qcov=0.935; evalue=2.02e-49; confidence=medium |
| GO | - |
| KEGG | - |
| Pfam | - |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130998465 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 1.00000 | XP_057779868.1 |
| 2 | Cytoplasm | 细胞质 | 1.00000 | XP_057779868.1 |
| 3 | Chromosome | 染色体 | 0.00000 | XP_057779868.1 |
| 4 | Centromere | 着丝粒 | 0.00000 | XP_057779868.1 |
| 5 | Chromatin | 染色质 | 0.00000 | XP_057779868.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr8:39676126 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B123 |
Chr8:39676232 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | A4,B100,B101,C59 |
Chr8:39676324 |
TC |
T |
1bp_deletion | frameshift_variant | 17 | A24,A8,B106,B25,B27,B48,B5,B7,B83,B98,C19,C61,C67,C68,C7,C78,D9 |
Chr8:39676362 |
G |
A |
EMS_canonical_SNV | stop_gained | 4 | B97,C31,C47,C49 |
Chr8:39676362 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B97,C31,C47,C49 |
Chr8:39676371 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | B14,B26,B41,C45,C72 |
Chr8:39676376 |
GA |
G |
1bp_deletion | frameshift_variant | 13 | B123,B138,B19,B56,B69,B78,B9,B94,C10,C18,C48,C74,C79 |
Chr8:39676378 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | A23,C76 |
Chr8:39676422 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B69,D2 |
Chr8:39676450 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | A21,B131,B86,C23,C36 |
Chr8:39676486 |
G |
A |
EMS_canonical_SNV | stop_gained | 45 | A11,A14,A15,A21,A6,B10,B107,B112,B122,B14,B16,B21,B30,B31,B34,B47,B58,B59,B69,B71,B73,B74,B83,B88,B93,C13,C16,C20,C22,C28,C33,C38,C39,C4,C46,C52,C53,C56,C67,C72,C73,C80,C9,D2,D6 |
Chr8:39676499 |
C |
T |
EMS_canonical_SNV | stop_gained | 8 | A23,A5,B101,B117,B136,B63,B73,B99 |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。