当前解析结果
SmilChr08G003646| 统一新 Gene ID | SmilChr08G003646 |
|---|---|
| 名称 | SmilChr08G003646 |
| 描述 | uncharacterized SmilChr08G003646 |
| 染色体 / SeqID | Chr08 / NC_080394.1 |
| 坐标与链方向 | 39978791 - 39979114 / - |
| NCBI Gene ID | LOC130998469 |
|---|---|
| GeneID | 130998469 |
| locus_tag | - |
| NCBI Name | LOC130998469 |
| 原始查询 | SmilChr08G003646 |
| 来源 | GFF basic annotation; NCBI GO GAF; Arabidopsis/Rice homolog |
|---|---|
| 描述 | confidence=no_hit |
| 产物 | confidence=no_hit |
| Arabidopsis | -- |
| Rice | -- |
| GO | GO:0003676 (nucleic acid binding) |
| KEGG | - |
| Pfam | - |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130998469 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytoplasm | 细胞质 | 0.80000 | XP_057779872.1 |
| 2 | Nucleus | 细胞核 | 0.20000 | XP_057779872.1 |
| 3 | Chromosome | 染色体 | 0.00000 | XP_057779872.1 |
| 4 | Centromere | 着丝粒 | 0.00000 | XP_057779872.1 |
| 5 | Chromatin | 染色质 | 0.00000 | XP_057779872.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr8:39978862 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C8 |
Chr8:39978872 |
CA |
C |
1bp_deletion | frameshift_variant | 15 | B112,B117,B134,B16,B31,B52,B7,B90,C2,C24,C36,C43,D2,D6,D9 |
Chr8:39978883 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B130 |
Chr8:39978922 |
AG |
A |
1bp_deletion | frameshift_variant | 26 | A13,A16,A18,B101,B105,B115,B125,B128,B136,B16,B20,B24,B62,B64,B72,B87,C17,C2,C20,C26,C36,C61,C79,C81,C83,C85 |
Chr8:39978965 |
C |
T |
EMS_canonical_SNV | stop_gained | 74 | A13,A16,A18,A23,B101,B103,B105,B106,B115,B125,B126,B128,B131,B132,B136,B16,B17,B20,B23,B24,B28,B3,B34,B36,B42,B5,B52,B58,B6,B62,B64,B66,B67,B69,B72,B76,B8,B80,B83,B87,B94,C10,C15,C17,C19,C2,C20,C21,C24,C26,C34,C36,C42,C47,C49,C5,C54,C56,C61,C64,C66,C69,C7,C77,C79,C8,C81,C82,C83,C85,C87,D10,D11,D8 |
Chr8:39978975 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B80,C15 |
Chr8:39978982 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | B2,B30,B43,B46,C54 |
Chr8:39978985 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | A20,B48,B65,C76 |
Chr8:39978986 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B43 |
Chr8:39978992 |
C |
T |
EMS_canonical_SNV | stop_gained | 92 | A10,A11,A16,A2,A22,A3,A5,A6,A9,B104,B108,B110,B111,B112,B117,B119,B121,B122,B126,B127,B13,B130,B132,B133,B136,B137,B139,B15,B16,B17,B20,B25,B27,B28,B33,B34,B37,B38,B39,B4,B42,B43,B44,B45,B48,B50,B51,B52,B53,B55,B56,B57,B60,B62,B64,B68,B71,B77,B80,B82,B84,B96,B98,C1,C16,C2,C20,C22,C27,C28,C32,C38,C41,C44,C47,C48,C49,C55,C58,C61,C62,C63,C67,C68,C70,C72,C83,D2,D3,D5,D7,D8 |
Chr8:39978994 |
ATC |
A |
2bp_deletion | frameshift_variant | 91 | A10,A13,A16,A18,A23,A25,B101,B104,B105,B106,B115,B123,B125,B126,B128,B132,B136,B16,B17,B20,B23,B24,B28,B3,B34,B36,B42,B5,B52,B56,B58,B6,B62,B63,B64,B66,B67,B69,B70,B72,B75,B76,B8,B80,B81,B83,B87,B94,B95,B99,C15,C16,C17,C19,C2,C21,C23,C24,C25,C26,C34,C36,C42,C43,C46,C47,C49,C5,C54,C56,C61,C64,C65,C66,C68,C69,C7,C71,C77,C79,C8,C81,C82,C83,C85,C86,C87,D10,D11,D6,D8 |
Chr8:39978997 |
G |
A |
EMS_canonical_SNV | stop_gained | 176 | A1,A10,A11,A13,A16,A18,A2,A21,A22,A24,A25,A3,A4,A5,A6,A8,A9,B1,B10,B101,B102,B104,B105,B108,B11,B110,B111,B112,B113,B114,B117,B118,B119,B120,B121,B122,B125,B126,B127,B128,B129,B13,B130,B131,B132,B133,B135,B136,B137,B138,B139,B15,B16,B17,B2,B20,B23,B25,B26,B27,B28,B29,B3,B31,B33,B34,B35,B37,B38,B39,B4,B40,B42,B43,B44,B45,B47,B48,B50,B51,B52,B53,B55,B56,B57,B58,B6,B60,B62,B64,B67,B68,B7,B71,B72,B73,B76,B77,B78,B8,B80,B82,B84,B85,B86,B89,B9,B90,B91,B92,B95,B96,B97,B98,C1,C11,C13,C16,C18,C19,C2,C20,C21,C22,C26,C27,C28,C3,C30,C31,C32,C33,C34,C35,C36,C37,C38,C41,C44,C45,C46,C47,C48,C49,C52,C53,C55,C58,C6,C60,C61,C62,C63,C64,C65,C66,C67,C68,C69,C70,C72,C73,C74,C76,C77,C78,C8,C83,D10,D11,D2,D3,D4,D5,D7,D8 |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。