Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr08G003655`

染色体: Chr08 坐标: 40189579-40203671 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr08G003655`
名称	SmilChr08G003655
描述	uncharacterized SmilChr08G003655
染色体 / SeqID	Chr08 / NC_080394.1
坐标与链方向	40189579 - 40203671 / `-`

ID 对照

NCBI Gene ID	`LOC130996748`
GeneID	`130996748`
locus_tag	`-`
NCBI Name	`LOC130996748`
原始查询	`SmilChr08G003655`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	Tetratricopeptide repeat (TPR)-like superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:831488]; symbol=AT5G16280; hit=AT5G16280; species=arabidopsis; confidence=high
产物	Tetratricopeptide repeat (TPR)-like superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:831488]; symbol=AT5G16280; hit=AT5G16280; species=arabidopsis; confidence=high
Arabidopsis	`AT5G16280` (AT5G16280) Tetratricopeptide repeat (TPR)-like superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:831488] identity=55.4; qcov=1; evalue=0; confidence=high
Rice	`Os03g0786900` - identity=49.9; qcov=0.99; evalue=0; confidence=high
GO	GO:0000407 (phagophore assembly site); GO:0005515 (protein binding); GO:0006888 (endoplasmic reticulum to Golgi vesicle-mediated transport); GO:0031410 (cytoplasmic vesicle); GO:0034497 (protein localization to phagophore assembly site); GO:1990072 (TRAPPIII protein complex)
KEGG	-
Pfam	PF12739 (TRAPPC-Trs85); PF24542 (Ig_TPPC8_C); PF24544 (Ig_TPPC8_2nd); PF24545 (Ig_TPPC8_1st)
InterPro	-
eggNOG	-
NR	GeneID:130996748

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cytoplasmic vesicle	细胞质囊泡	0.80000	`XP_057778017.1`
2	Cytosol	细胞质基质	0.80000	`XP_057778017.1`
3	Golgi apparatus	高尔基体	0.80000	`XP_057778017.1`
4	Trans-golgi network	Trans-golgi network	0.80000	`XP_057778017.1`
5	Vesicle	囊泡	0.80000	`XP_057778017.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr8:40192431`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D6
`Chr8:40193574`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	D11
`Chr8:40193592`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B63,B8,C51,C57
`Chr8:40195086`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	C73,C81
`Chr8:40197132`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B128
`Chr8:40197194`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B66
`Chr8:40200297`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B26
`Chr8:40202664`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	A6

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057778017.1

1290 aa

645

1290

TRAPPC-Trs85

Ig_TPPC8_1st

Ig_TPPC8_2nd

Ig_TPPC8_C

PF12739 TRAPPC-Trs85 15-432 aa PF24545 Ig_TPPC8_1st 605-815 aa PF24544 Ig_TPPC8_2nd 813-932 aa PF24542 Ig_TPPC8_C 1122-1253 aa

XP_057778018.1

1288 aa

644

1288

TRAPPC-Trs85

Ig_TPPC8_1st

Ig_TPPC8_2nd

Ig_TPPC8_C

PF12739 TRAPPC-Trs85 15-432 aa PF24545 Ig_TPPC8_1st 605-815 aa PF24544 Ig_TPPC8_2nd 813-932 aa PF24542 Ig_TPPC8_C 1120-1251 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057778017.1`	Pfam	`PF12739`	TRAPPC-Trs85	Family	15	432	1e-83	282.8	ER-Golgi trafficking TRAPP I complex 85 kDa subunit
`XP_057778017.1`	Pfam	`PF24545`	Ig_TPPC8_1st	Domain	605	815	1.6e-16	61.3	TPPC8 first Ig-like domain
`XP_057778017.1`	Pfam	`PF24544`	Ig_TPPC8_2nd	Domain	813	932	3.9e-09	37.9	TPPC8 second Ig-like domain
`XP_057778017.1`	Pfam	`PF24542`	Ig_TPPC8_C	Domain	1122	1253	1.5e-08	35.1	TPPC8 C-terminal Ig-like domain
`XP_057778018.1`	Pfam	`PF12739`	TRAPPC-Trs85	Family	15	432	1e-83	282.8	ER-Golgi trafficking TRAPP I complex 85 kDa subunit
`XP_057778018.1`	Pfam	`PF24545`	Ig_TPPC8_1st	Domain	605	815	1.6e-16	61.3	TPPC8 first Ig-like domain
`XP_057778018.1`	Pfam	`PF24544`	Ig_TPPC8_2nd	Domain	813	932	3.9e-09	37.9	TPPC8 second Ig-like domain
`XP_057778018.1`	Pfam	`PF24542`	Ig_TPPC8_C	Domain	1120	1251	1.5e-08	35.1	TPPC8 C-terminal Ig-like domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057922035.1
GAAGCCCATTATCAATATTATCTTTTGGGCCTAAATAAGAGCCCACAAGCAGTAGAGTTGCCTTCCTACGCACAGATCTCTCTTTCTACCATCCTTTGCTGTGGAAGATCTGAGTCTGCAGCGTCTGTGTATGCAAAACGAGTCAACTCAGCGAGTGAGGCCGTCCAACTGTATCTCCGTATCTGATACAAGTGTTTTTTCCGCTTAGCAATCCGGGTAGAATCCGAGGGGGATGGCGGATCCGGCGACCACGAAGCTCG...

XM_057922034.1
AGAGTTGCCTTCCTACGCACAGATCTCTCTTTCTACCATCCTTTGCTGTGGAAGATCTGAGTCTGCAGCGTCTGTGTATGCAAAACGAGTCAACTCAGCGAGTGAGGCCGTCCAACTGTATCTCCGTATCTGATACAAGTGTTTTTTCCGCTTAGCAATCCGGGTAGAATCCGAGGGGGATGGCGGATCCGGCGACCACGAAGCTCGGCAGGATGCTGTTGGACGAGATCAGCCCGGCTGTGATGGTGCTCCGTACGCCG...

CDS

2 records

下载 CDS FASTA

LOC130996748
ATGGCGGATCCGGCGACCACGAAGCTCGGCAGGATGCTGTTGGACGAGATCAGCCCGGCTGTGATGGTGCTCCGTACGCCGCTCGTAGAGGAGTCCTGCAGGAGAAATGATTTATCCCTGATTGAAATGTTGGCCCCCTACACCAGTTTCAATAACATCGACGTGCCAGTAAGGACGGCTAGTGATCAGCCGTACAGATTGAGGAAATTCAAATTGAGATTGTTTTATGATTCGGAAATTCGGCAGCGGAGTACTGAGGC...

Protein

2 records

下载 Protein FASTA

XP_057778017.1
MADPATTKLGRMLLDEISPAVMVLRTPLVEESCRRNDLSLIEMLAPYTSFNNIDVPVRTASDQPYRLRKFKLRLFYDSEIRQRSTEAANERLKQLITHAGDKEISELCSRQADIESVITTSAQELVPSWFQNFNKELIDAVAFSEHEAFDHPVACLVAVSSKDKDPIGKFVDLFNTNQLPHLLNDGAMDPKIMKYYLLVHDNQEGMPEKATAILAEMRSTFGANDCRLLCINSSVDGTEEHQQNPWASHKNSASNEKQFG...

XP_057778018.1
MADPATTKLGRMLLDEISPAVMVLRTPLVEESCRRNDLSLIEMLAPYTSFNNIDVPVRTASDQPYRLRKFKLRLFYDSEIRQRSTEAANERLKQLITHAGDKEISELCSRQADIESVITTSAQELVPSWFQNFNKELIDAVAFSEHEAFDHPVACLVAVSSKDKDPIGKFVDLFNTNQLPHLLNDGAMDPKIMKYYLLVHDNQEGMPEKATAILAEMRSTFGANDCRLLCINSSVDGTEEHQQNPWASHKNSASNEKQFG...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

跳转到基因组浏览器