Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr08G003707`

染色体: Chr08 坐标: 41628842-41631743 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr08G003707`
名称	SmilChr08G003707
描述	protein FAR1-RELATED SEQUENCE 5-like
染色体 / SeqID	Chr08 / NC_080394.1
坐标与链方向	41628842 - 41631743 / `+`

ID 对照

NCBI Gene ID	`LOC130998485`
GeneID	`130998485`
locus_tag	`-`
NCBI Name	`LOC130998485`
原始查询	`SmilChr08G003707`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	protein FAR1-RELATED SEQUENCE 5-like
产物	protein FAR1-RELATED SEQUENCE 5-like
Arabidopsis	`AT4G38180` (FRS5) FAR1-related sequence 5 [Source:NCBI gene (formerly Entrezgene);Acc:829974] identity=26.3; qcov=0.837; evalue=1.54e-61; confidence=low
Rice	`Os11g0681300` - identity=29.4; qcov=0.714; evalue=3.54e-68; confidence=low
GO	GO:0003677 (DNA binding); GO:0004803 (transposase activity); GO:0006313 (DNA transposition); GO:0006355 (regulation of DNA-templated transcription); GO:0008270 (zinc ion binding)
KEGG	-
Pfam	PF00872 (Transposase_mut); PF10551 (MULE); PF21056 (ZSWIM1-3_RNaseH-like)
InterPro	-
eggNOG	-
NR	GeneID:130998485

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057779885.1`
2	Cytoplasm	细胞质	0.20000	`XP_057779885.1`
3	Chromosome	染色体	0.00000	`XP_057779885.1`
4	Centromere	着丝粒	0.00000	`XP_057779885.1`
5	Chromatin	染色质	0.00000	`XP_057779885.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr8:41628852`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	B59,B93,C12,C21,C70
`Chr8:41629436`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B82
`Chr8:41629644`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B41,B6,B85
`Chr8:41629807`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C53
`Chr8:41629819`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B99,D5
`Chr8:41630364`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	B140,B52,B61,C53,C82
`Chr8:41630384`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C31
`Chr8:41630466`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B108,B111,B79,C43
`Chr8:41630653`	`G`	`A`	EMS_canonical_SNV	stop_gained	18	A10,B100,B101,B108,B111,B125,B23,B56,B65,B79,C16,C21,C36,C40,C43,C54,C71,C78
`Chr8:41630761`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	C56,D9
`Chr8:41630767`	`G`	`A`	EMS_canonical_SNV	stop_gained	1	B118
`Chr8:41630767`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B118

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057779885.1

667 aa

334

667

ZSWIM1-3_RNaseH-like

MULE

Transposase_mut

PF21056 ZSWIM1-3_RNaseH-like 168-287 aa PF10551 MULE 206-297 aa PF00872 Transposase_mut 236-396 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057779885.1`	Pfam	`PF21056`	ZSWIM1-3_RNaseH-like	Domain	168	287	5.6e-09	36.7	Zinc finger SWIM domain-containing protein 1/3, RNaseH-like domain
`XP_057779885.1`	Pfam	`PF10551`	MULE	Domain	206	297	1.5e-25	90.1	MULE transposase domain
`XP_057779885.1`	Pfam	`PF00872`	Transposase_mut	Family	236	396	9.3e-06	25.5	Transposase, Mutator family

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057923902.1
ATGGATGATACAGGATATCTGGCGTATGAAGAAAATGAAACAGGTGAACTTATAATACCTGAATGCGAGGCTAAGAGCAAACCGTTTGTGGGGCAGATTTTTCCAAATTTGGATGTAGGATGTAAGTTTTACGACGACTATGCAGAGTTATGCGGTTTTACATCCAGAAAAAGCACAAGCACAAAGGATGATGATGATTTTGGTACGTATAATGTGCGCACGTTCATTGAGGGTCATAATCACACCATGGTTCCTACTGT...

CDS

1 records

下载 CDS FASTA

LOC130998485
ATGGATGATACAGGATATCTGGCGTATGAAGAAAATGAAACAGGTGAACTTATAATACCTGAATGCGAGGCTAAGAGCAAACCGTTTGTGGGGCAGATTTTTCCAAATTTGGATGTAGGATGTAAGTTTTACGACGACTATGCAGAGTTATGCGGTTTTACATCCAGAAAAAGCACAAGCACAAAGGATGATGATGATTTTGGTACGTATAATGTGCGCACGTTCATTGAGGGTCATAATCACACCATGGTTCCTACTGT...

Protein

1 records

下载 Protein FASTA

XP_057779885.1
MDDTGYLAYEENETGELIIPECEAKSKPFVGQIFPNLDVGCKFYDDYAELCGFTSRKSTSTKDDDDFGTYNVRTFIEGHNHTMVPTVSRHLMPVNRNVTLAHEMWITSAIKANIGPIRSFRMYKEIMGEYEDIGCVSNDFKNFVRDLNVYALDSNAHMILQTFLNKKELGNGFQYFYDVDDENRLRRLIWTDEVSVKNYKLFGEAVSFDATYNTNMYKMIFTPFMGRDNHGKCLSFGAAIISREDVNSYSWVLEKFVECV...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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JBrowse

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