Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr08G003730`

染色体: Chr08 坐标: 42135171-42136406 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr08G003730`
名称	SmilChr08G003730
描述	26S proteasome regulatory subunit 4 homolog A-like
染色体 / SeqID	Chr08 / NC_080394.1
坐标与链方向	42135171 - 42136406 / `-`

ID 对照

NCBI Gene ID	`LOC130998493`
GeneID	`130998493`
locus_tag	`-`
NCBI Name	`LOC130998493`
原始查询	`SmilChr08G003730`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	26S proteasome regulatory subunit 4 homolog A-like
产物	26S proteasome regulatory subunit 4 homolog A-like
Arabidopsis	`AT4G29040` (RPT2a) regulatory particle AAA-ATPase 2A [Source:NCBI gene (formerly Entrezgene);Acc:829025] identity=95.1; qcov=1; evalue=0; confidence=high
Rice	`Os03g0298400` (OsRPT2b) - identity=91.4; qcov=1.01; evalue=0; confidence=high
GO	GO:0005524 (ATP binding); GO:0008540 (proteasome regulatory particle, base subcomplex); GO:0016887 (ATP hydrolysis activity); GO:0036402 (proteasome-activating activity); GO:0043161 (proteasome-mediated ubiquitin-dependent protein catabolic process)
KEGG	smil03050 (Proteasome - Salvia miltiorrhiza (redroot sage))
Pfam	PF00004 (AAA); PF16450 (Prot_ATP_ID_OB_C)
InterPro	-
eggNOG	-
NR	GeneID:130998493

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057779893.1`
2	Cytoplasm	细胞质	1.00000	`XP_057779893.1`
3	Cytosol	细胞质基质	1.00000	`XP_057779893.1`
4	Nucleoplasm	核质	0.20000	`XP_057779893.1`
5	Chromosome	染色体	0.00000	`XP_057779893.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr8:42135381`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B45
`Chr8:42135387`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B45
`Chr8:42135389`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B45
`Chr8:42135390`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B45
`Chr8:42135396`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B45
`Chr8:42135408`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B45
`Chr8:42135444`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B45
`Chr8:42135458`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B45
`Chr8:42135656`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C57
`Chr8:42135981`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	A19
`Chr8:42136200`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B22,B41
`Chr8:42136242`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D11

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057779893.1

388 aa

194

388

Prot_ATP_ID_OB_C

AAA

PF16450 Prot_ATP_ID_OB_C 113-167 aa PF00004 AAA 226-359 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057779893.1`	Pfam	`PF16450`	Prot_ATP_ID_OB_C	Domain	113	167	1.6e-10	41.4	Proteasomal ATPase OB C-terminal domain
`XP_057779893.1`	Pfam	`PF00004`	AAA	Domain	226	359	2.1e-41	142.2	ATPase family associated with various cellular activities (AAA)

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057923910.1
TAGAAAGCTTTAGGGATTGGCATATTTGCCCAATCTCTAATCCACAAACCCTAATTTCGCCTTCTAATAATGGGTCAGGGCACTCCCGGCGGCCTCAATCGGCAGCTCCCCGGCGACCGCAAGAACGAAGGCGACAAGAAGGAAAAGAAATTCGAACCGGCGGCGCCGCCGGCTCGCGTCGGACGCAAGCAGCGCAAGCAGAAGGGCCCGGAGGCGGCTGCACGGATTCCGGCGGTGACGCCGCTGACGAAGTGCAAGCT...

CDS

1 records

下载 CDS FASTA

LOC130998493
ATGGGTCAGGGCACTCCCGGCGGCCTCAATCGGCAGCTCCCCGGCGACCGCAAGAACGAAGGCGACAAGAAGGAAAAGAAATTCGAACCGGCGGCGCCGCCGGCTCGCGTCGGACGCAAGCAGCGCAAGCAGAAGGGCCCGGAGGCGGCTGCACGGATTCCGGCGGTGACGCCGCTGACGAAGTGCAAGCTGCGGCTCCTGAAGCTGGAGAGAATCAAGGACTATCTGCTGATGGAGGAGGAATTCGTGGCCAATCAGGA...

Protein

1 records

下载 Protein FASTA

XP_057779893.1
MGQGTPGGLNRQLPGDRKNEGDKKEKKFEPAAPPARVGRKQRKQKGPEAAARIPAVTPLTKCKLRLLKLERIKDYLLMEEEFVANQERLKPQEEKTEEDRSKVDDLRGTPMSVGNLEELIDENHAIVSSSVGPEYYVGILSFVDKDQLEPGCAILMHNKVLSVVGLLQDDVDPMVSVMKVEKAPLESYADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTSATFLRVVGSELI...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

跳转到基因组浏览器