当前解析结果
SmilChr08G003734| 统一新 Gene ID | SmilChr08G003734 |
|---|---|
| 名称 | SmilChr08G003734 |
| 描述 | uncharacterized SmilChr08G003734 |
| 染色体 / SeqID | Chr08 / NC_080394.1 |
| 坐标与链方向 | 42202374 - 42205716 / - |
| NCBI Gene ID | LOC130998494 |
|---|---|
| GeneID | 130998494 |
| locus_tag | - |
| NCBI Name | LOC130998494 |
| 原始查询 | SmilChr08G003734 |
| 来源 | GFF basic annotation; Arabidopsis/Rice homolog |
|---|---|
| 描述 | hit=Os12g0292200; species=rice; confidence=weak |
| 产物 | hit=Os12g0292200; species=rice; confidence=weak |
| Arabidopsis | -- |
| Rice | Os12g0292200- identity=35.2; qcov=0.162; evalue=1.41e-06; confidence=weak |
| GO | - |
| KEGG | - |
| Pfam | - |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130998494 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytoplasm | 细胞质 | 1.00000 | XP_057779895.1 |
| 2 | Cytoplasmic granule | 细胞质颗粒 | 0.60000 | XP_057779895.1 |
| 3 | Nucleus | 细胞核 | 0.40000 | XP_057779895.1 |
| 4 | Cytoplasmic ribonucleoprotein granule | Cytoplasmic ribonucleoprotein granule | 0.40000 | XP_057779895.1 |
| 5 | Nucleoplasm | 核质 | 0.20000 | XP_057779895.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr8:42202388 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B99,C87 |
Chr8:42202416 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B60 |
Chr8:42204614 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | A11,C6 |
Chr8:42204616 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | A22,B38,C6,D6 |
Chr8:42204649 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B32,B45,B81 |
Chr8:42204661 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B65,B81,C6 |
Chr8:42204690 |
G |
A |
EMS_canonical_SNV | stop_gained | 67 | A11,A16,A19,A2,A20,A22,A3,A9,B103,B104,B106,B11,B112,B113,B118,B12,B120,B122,B125,B136,B139,B14,B15,B21,B24,B31,B40,B54,B57,B60,B72,B74,B77,B79,B87,B90,B92,B96,C11,C12,C18,C2,C21,C26,C28,C34,C37,C39,C40,C46,C50,C51,C53,C61,C64,C66,C73,C75,C8,C84,C85,C9,D10,D2,D4,D7,D9 |
Chr8:42204694 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B98,C44 |
Chr8:42204701 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B49,B58,C60,C72 |
Chr8:42204732 |
G |
A |
EMS_canonical_SNV | stop_gained | 27 | A13,A15,A21,B105,B11,B123,B134,B20,B27,B30,B61,B67,B68,B73,C13,C14,C17,C20,C22,C30,C34,C45,C47,C65,C72,C8,C85 |
Chr8:42204789 |
G |
A |
EMS_canonical_SNV | stop_gained | 84 | A11,A2,A22,A3,A4,A5,A9,B10,B104,B107,B11,B110,B111,B112,B113,B114,B118,B125,B130,B136,B137,B14,B140,B18,B21,B25,B26,B30,B31,B35,B37,B39,B54,B60,B66,B70,B72,B77,B78,B79,B82,B87,B90,B92,B99,C12,C16,C21,C26,C28,C3,C30,C31,C33,C35,C37,C39,C40,C41,C45,C48,C5,C50,C53,C56,C60,C62,C64,C66,C67,C68,C73,C75,C8,C80,C82,C83,C84,C86,C9,D3,D4,D7,D9 |
Chr8:42204792 |
G |
A |
EMS_canonical_SNV | stop_gained | 1 | B103 |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。