当前解析结果
SmilChr08G003737| 统一新 Gene ID | SmilChr08G003737 |
|---|---|
| 名称 | SmilChr08G003737 |
| 描述 | probable carboxylesterase 15 |
| 染色体 / SeqID | Chr08 / NC_080394.1 |
| 坐标与链方向 | 42240920 - 42244462 / - |
| NCBI Gene ID | LOC130998495 |
|---|---|
| GeneID | 130998495 |
| locus_tag | - |
| NCBI Name | LOC130998495 |
| 原始查询 | SmilChr08G003737 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | probable carboxylesterase 15 |
| 产物 | probable carboxylesterase 15 |
| Arabidopsis | AT5G06570 (AT5G06570)alpha/beta-Hydrolases superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:830545] identity=55.4; qcov=0.997; evalue=4.69e-116; confidence=high |
| Rice | Os07g0162900 (OsCDAP3)- identity=52.4; qcov=0.972; evalue=7e-115; confidence=high |
| GO | GO:0016787 (hydrolase activity) |
| KEGG | - |
| Pfam | PF00135 (COesterase); PF07859 (Abhydrolase_3); PF20434 (BD-FAE) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130998495 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytoplasm | 细胞质 | 1.00000 | XP_057779896.1 |
| 2 | Cytosol | 细胞质基质 | 1.00000 | XP_057779896.1 |
| 3 | Nucleus | 细胞核 | 0.00000 | XP_057779896.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057779896.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057779896.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr8:42243808 |
GC |
G |
1bp_deletion | frameshift_variant | 1 | B132 |
Chr8:42243808 |
GC |
G |
1bp_deletion | CDS_variant | 1 | B132 |
Chr8:42243910 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B29,C86,C9 |
Chr8:42243911 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B95,C76 |
Chr8:42243923 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B53 |
Chr8:42243930 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B95,C76 |
Chr8:42243931 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | B123,B127,B36,C67,D2 |
Chr8:42243938 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B17,B91,C79 |
Chr8:42243942 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B37,B72 |
Chr8:42243948 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | A19,A4,B90,C59,C86 |
Chr8:42243953 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | A2,B131,C37 |
Chr8:42243957 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | B2,B29,B53,C76,C9 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057779896.1PF00135
COesterase 54-136 aa
PF20434
BD-FAE 58-174 aa
PF07859
Abhydrolase_3 74-299 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057779896.1 |
Pfam | PF00135 |
COesterase | Domain | 54 | 136 | 1.2e-07 | 31.8 | Carboxylesterase family |
XP_057779896.1 |
Pfam | PF20434 |
BD-FAE | Domain | 58 | 174 | 3.5e-11 | 43.7 | BD-FAE |
XP_057779896.1 |
Pfam | PF07859 |
Abhydrolase_3 | Domain | 74 | 299 | 8.4e-59 | 199.6 | alpha/beta hydrolase fold |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。