Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr08G003749`

染色体: Chr08 坐标: 42536395-42540165 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr08G003749`
名称	SmilChr08G003749
描述	myosin-binding protein 7-like
染色体 / SeqID	Chr08 / NC_080394.1
坐标与链方向	42536395 - 42540165 / `+`

ID 对照

NCBI Gene ID	`LOC130997119`
GeneID	`130997119`
locus_tag	`-`
NCBI Name	`LOC130997119`
原始查询	`SmilChr08G003749`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	myosin-binding protein 7-like
产物	myosin-binding protein 7-like
Arabidopsis	`AT5G06560` (AT5G06560) myosin-binding protein (Protein of unknown function, DUF593) [Source:NCBI gene (formerly Entrezgene);Acc:830544] identity=47.1; qcov=1.02; evalue=2.35e-146; confidence=high
Rice	`Os12g0488700` - identity=31; qcov=0.933; evalue=6.04e-43; confidence=low
GO	-
KEGG	-
Pfam	PF04576 (Zein-binding)
InterPro	-
eggNOG	-
NR	GeneID:130997119

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	0.80000	`XP_057778363.1`
2	Nucleus membrane	核膜	0.40000	`XP_057778362.1`
3	Cytoplasm	细胞质	0.20000	`XP_057778363.1`
4	Chromosome	染色体	0.00000	`XP_057778363.1`
5	Centromere	着丝粒	0.00000	`XP_057778363.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr8:42537372`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C43
`Chr8:42538354`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B29
`Chr8:42538361`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C52
`Chr8:42538787`	`G`	`GT`	1bp_insertion	frameshift_variant	88	A10,A14,A16,A18,A19,A2,A20,A22,A3,A4,A9,B104,B105,B108,B110,B113,B117,B12,B125,B128,B129,B130,B134,B140,B17,B2,B21,B23,B31,B33,B35,B4,B40,B45,B47,B49,B52,B56,B58,B59,B61,B62,B64,B65,B66,B7,B70,B74,B8,B83,B86,B9,B95,B96,C16,C21,C25,C26,C28,C32,C34,C36,C40,C53,C54,C56,C58,C63,C64,C66,C67,C68,C70,C71,C72,C74,C78,C8,C81,C82,C84,C9,D1,D10,D2,D4,D7,D9
`Chr8:42539843`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C59
`Chr8:42539859`	`C`	`T`	EMS_canonical_SNV	stop_gained	7	B115,B74,B98,C11,C2,C69,C80

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057778362.1

513 aa

256

513

Zein-binding

PF04576 Zein-binding 74-164 aa

XP_057778363.1

511 aa

256

511

Zein-binding

PF04576 Zein-binding 74-164 aa

XP_057778364.1

511 aa

256

511

Zein-binding

PF04576 Zein-binding 74-164 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057778362.1`	Pfam	`PF04576`	Zein-binding	Coiled-coil	74	164	4.1e-32	111.1	Zein-binding
`XP_057778363.1`	Pfam	`PF04576`	Zein-binding	Coiled-coil	74	164	4e-32	111.1	Zein-binding
`XP_057778364.1`	Pfam	`PF04576`	Zein-binding	Coiled-coil	74	164	4e-32	111.1	Zein-binding

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

3 records

下载 cDNA FASTA

XM_057922379.1
TTGTATCTATTTATAGAGGCAAAAAATGAGGCGAAGAGAGAGAGAAAGAGATATTGAAAGAGAGAGAGAGAGAGATGGCGGCCGTCCGGCTTAGTGTAAACGGGACGGGGAAGAAGTGGTGGTTCTGTTCTGACGTTTAAATTTGGAAGGGCAAAAAGATTTCCACGGAAAACGAAGCTAATCTGAAACAAATACCAGAAGCACAGAGCGCACAACGCTTCTAGGGCTGCGAATTCCTCTCTGCTCAAATTTTGTTCCCG...

XM_057922380.1
TTGTATCTATTTATAGAGGCAAAAAATGAGGCGAAGAGAGAGAGAAAGAGATATTGAAAGAGAGAGAGAGAGAGATGGCGGCCGTCCGGCTTAGTGTAAACGGGACGGGGAAGAAGTGGTGGTTCTGTTCTGACGTTTAAATTTGGAAGGGCAAAAAGATTTCCACGGAAAACGAAGCTAATCTGAAACAAATACCAGAAGCACAGAGCGCACAACGCTTCTAGGGCTGCGAATTCCTCTCTGCTCAAATTTTGTTCCCG...

CDS

3 records

下载 CDS FASTA

LOC130997119
ATGGATTCTGGGGATTCTCCCCCATCGGCCAGCGAGATAAAATGCTGTGACCGCGACTGCGATTGCAACGAGTCTTCGATGATGGAGAATTCTCCTTCAGGGACGTGTATTCAGGCTGTGAAGCGCAAATGTAATGAGTTTGAGGAAGAAACCTGCCTCTCCACCCAAGGGGTCGTTGTGCCCCAAAATGCCCGTGTCGAGATAGGAAATGAATGTACAGCACTCCGTCAGATGGTGATCAGCCAGCAGCAGACCATTGA...

Protein

3 records

下载 Protein FASTA

XP_057778362.1
MDSGDSPPSASEIKCCDRDCDCNESSMMENSPSGTCIQAVKRKCNEFEEETCLSTQGVVVPQNARVEIGNECTALRQMVISQQQTIEDLISELEEERNAASTAANEALSMILRLQKDKAEIQMELRQFKRFAEEKMAHDQQETLGLEDMLYKREEAIQSLSCEIEAYRHRMMSYGLSETEVDGVVQAMSRNYSMIEDMEGQFDYVNDMYPPLKCNLNESQAYPVGDDEIPDIEKYAFGETPHSGDQLKDLECRINQLEKS...

XP_057778363.1
MDSGDSPPSASEIKCCDRDCDCNESSMMENSPSGTCIQAVKRKCNEFEEETCLSTQGVVVPQNARVEIGNECTALRQMVISQQQTIEDLISELEEERNAASTAANEALSMILRLQKDKAEIQMELRQFKRFAEEKMAHDQQETLGLEDMLYKREEAIQSLSCEIEAYRHRMMSYGLSETEVDGVVQAMSRNYSMIEDMEGQFDYVNDMYPPLKCNLNESQAYPVGDDEIPDIEKYAFGETPHSGDQLKDLECRINQLEKS...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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JBrowse

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